RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TNMDQ9H2S6 317 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 CLSTN2Q9H4D0 955 aa17.45■□□□□ 0.38
NUP54-217ENST00000514987 SPATA31A1Q5TZJ5 1347 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 RTL9Q8NET4 1388 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 DTNBO60941 627 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 SLC5A1P13866 664 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 TRDNQ13061 729 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 DDB1Q16531 1140 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 TTLL5Q6EMB2 1281 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 RBM43Q6ZSC3 357 aaKnown RBP17.44■□□□□ 0.38
NUP54-217ENST00000514987 PUS7LQ9H0K6 701 aaKnown RBP17.44■□□□□ 0.38
NUP54-217ENST00000514987 RCOR1Q9UKL0 485 aa17.44■□□□□ 0.38
NUP54-217ENST00000514987 NRAPQ86VF7 1730 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 FOXP2O15409 715 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 PRC1O43663 620 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 TPM3P06753 285 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 LIG1P18858 919 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 FGFR2P21802 821 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 SLC9C2Q5TAH2 1124 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 MB21D2Q8IYB1 491 aaPredicted RBP17.43■□□□□ 0.38
NUP54-217ENST00000514987 UTP14AQ9BVJ6 771 aaKnown RBP17.43■□□□□ 0.38
NUP54-217ENST00000514987 DACT1Q9NYF0 836 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 UBN2Q6ZU65 1347 aa17.43■□□□□ 0.38
NUP54-217ENST00000514987 TERF1P54274 439 aa17.42■□□□□ 0.38
NUP54-217ENST00000514987 CCT2P78371 535 aaKnown RBP17.42■□□□□ 0.38
NUP54-217ENST00000514987 TPRNQ4KMQ1 711 aa17.42■□□□□ 0.38
NUP54-217ENST00000514987 CCDC102BQ68D86 513 aa17.42■□□□□ 0.38
NUP54-217ENST00000514987 FAM200AQ8TCP9 573 aa17.42■□□□□ 0.38
NUP54-217ENST00000514987 BICD2Q8TD16 824 aa17.42■□□□□ 0.38
NUP54-217ENST00000514987 NAP1L2Q9ULW6 460 aaPredicted RBP17.42■□□□□ 0.38
NUP54-217ENST00000514987 ZMYM6O95789 1325 aa17.42■□□□□ 0.38
NUP54-217ENST00000514987 DDX60Q8IY21 1712 aaKnown RBP17.42■□□□□ 0.38
NUP54-217ENST00000514987 KAT6BQ8WYB5 2073 aa17.41■□□□□ 0.38
NUP54-217ENST00000514987 CTAGE5O15320 804 aa17.41■□□□□ 0.38
NUP54-217ENST00000514987 ADCY5O95622 1261 aa17.41■□□□□ 0.38
NUP54-217ENST00000514987 ALX1Q15699 326 aa17.41■□□□□ 0.38
NUP54-217ENST00000514987 INTS5Q6P9B9 1019 aaKnown RBP17.41■□□□□ 0.38
NUP54-217ENST00000514987 SMARCC1Q92922 1105 aaPredicted RBP17.41■□□□□ 0.38
NUP54-217ENST00000514987 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.41■□□□□ 0.38
NUP54-217ENST00000514987 USP25Q9UHP3 1055 aa17.41■□□□□ 0.38
NUP54-217ENST00000514987 CARMIL3Q8ND23 1372 aa17.41■□□□□ 0.38
NUP54-217ENST00000514987 A0A0G2JLW4 131 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 TYRO3Q06418 890 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 CCDC152Q4G0S7 254 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 LAMB2P55268 1798 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 PDE6AP16499 860 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 ADD1P35611 737 aaKnown RBP17.4■□□□□ 0.38
NUP54-217ENST00000514987 HAND2P61296 217 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 PGBD1Q96JS3 809 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 MPHOSPH8Q99549 860 aa17.4■□□□□ 0.38
NUP54-217ENST00000514987 PIH1D3Q9NQM4 214 aaKnown RBP17.4■□□□□ 0.38
NUP54-217ENST00000514987 KLF18A0A0U1RQI7 1052 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 IDH1O75874 414 aaKnown RBP17.39■□□□□ 0.37
NUP54-217ENST00000514987 TPM2P07951 284 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 ATP6V1AP38606 617 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 CRKLP46109 303 aaKnown RBP17.39■□□□□ 0.37
NUP54-217ENST00000514987 MAP3K12Q12852 859 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 SUSD4Q5VX71 490 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 SASS6Q6UVJ0 657 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 PI16Q6UXB8 463 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 BARGINQ6ZT62 677 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 NCOA5Q9HCD5 579 aaKnown RBP17.39■□□□□ 0.37
NUP54-217ENST00000514987 ZNF652Q9Y2D9 606 aa17.39■□□□□ 0.37
NUP54-217ENST00000514987 ZNF831Q5JPB2 1677 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 LOC102724428A0A0B4J2F2 783 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 GOLGA6L6A8MZA4 724 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 CDKL5O76039 1030 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 PHKA1P46020 1223 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 SIK1P57059 783 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 KIAA2012Q0VF49 1180 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 CHST3Q7LGC8 479 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 BRAPQ7Z569 592 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 SPATA5Q8NB90 893 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 TMEM87BQ96K49 555 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 ZNF532Q9HCE3 1301 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 PHLPP1O60346 1717 aa17.38■□□□□ 0.37
NUP54-217ENST00000514987 DOCK2Q92608 1830 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 TCRBV5S4A2TA0A5A2 114 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 GOLGA8BA8MQT2 603 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 CPLX1O14810 134 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 RGL2O15211 777 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 CAMTA2O94983 1202 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 IGHMBP2P38935 993 aaKnown RBP17.37■□□□□ 0.37
NUP54-217ENST00000514987 CPLX2Q6PUV4 134 aaKnown RBP17.37■□□□□ 0.37
NUP54-217ENST00000514987 CCDC73Q6ZRK6 1079 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 AIDAQ96BJ3 306 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 C8orf76Q96K31 380 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 ANGEL1Q9UNK9 670 aaKnown RBP17.37■□□□□ 0.37
NUP54-217ENST00000514987 MRVI1Q9Y6F6 885 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 SPATA31A5Q5VU36 1347 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 SPATA31A7Q8IWB4 1347 aa17.37■□□□□ 0.37
NUP54-217ENST00000514987 NR1I2O75469 434 aa17.36■□□□□ 0.37
NUP54-217ENST00000514987 APPP05067 770 aa17.36■□□□□ 0.37
NUP54-217ENST00000514987 GNAT2P19087 354 aa17.36■□□□□ 0.37
NUP54-217ENST00000514987 ANTXR2P58335 489 aa17.36■□□□□ 0.37
NUP54-217ENST00000514987 STRBPQ96SI9 672 aaKnown RBP17.36■□□□□ 0.37
NUP54-217ENST00000514987 RTEL1Q9NZ71 1219 aa17.36■□□□□ 0.37
NUP54-217ENST00000514987 PATL2C9JE40 543 aaKnown RBP17.36■□□□□ 0.37
NUP54-217ENST00000514987 FDPSP14324 419 aaKnown RBP17.36■□□□□ 0.37
NUP54-217ENST00000514987 CAMK4Q16566 473 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms