RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 USP17L8P0C7I0 530 aa17.56■□□□□ 0.4
NUP54-216ENST00000514901 GORABQ5T7V8 394 aa17.56■□□□□ 0.4
NUP54-216ENST00000514901 MICALL2Q8IY33 904 aa17.56■□□□□ 0.4
NUP54-216ENST00000514901 OGFOD1Q8N543 542 aa17.56■□□□□ 0.4
NUP54-216ENST00000514901 RBM46Q8TBY0 533 aaKnown RBP17.56■□□□□ 0.4
NUP54-216ENST00000514901 RHPN1Q8TCX5 695 aa17.56■□□□□ 0.4
NUP54-216ENST00000514901 ADORA1P30542 326 aa17.55■□□□□ 0.4
NUP54-216ENST00000514901 ZNF280AP59817 542 aaPredicted RBP17.55■□□□□ 0.4
NUP54-216ENST00000514901 CCDC102BQ68D86 513 aa17.55■□□□□ 0.4
NUP54-216ENST00000514901 LDHDQ86WU2 507 aa17.55■□□□□ 0.4
NUP54-216ENST00000514901 DCTPP1Q9H773 170 aa17.55■□□□□ 0.4
NUP54-216ENST00000514901 DENND2AQ9ULE3 1009 aa17.55■□□□□ 0.4
NUP54-216ENST00000514901 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.55■□□□□ 0.4
NUP54-216ENST00000514901 EAPPQ56P03 285 aaPredicted RBP17.54■□□□□ 0.4
NUP54-216ENST00000514901 MFSD14BQ5SR56 506 aa17.54■□□□□ 0.4
NUP54-216ENST00000514901 CLASRPQ8N2M8 674 aaKnown RBP17.54■□□□□ 0.4
NUP54-216ENST00000514901 EXOC6Q8TAG9 804 aa17.54■□□□□ 0.4
NUP54-216ENST00000514901 WDR66Q8TBY9 1149 aa17.54■□□□□ 0.4
NUP54-216ENST00000514901 HDAC9Q9UKV0 1011 aa17.54■□□□□ 0.4
NUP54-216ENST00000514901 IQSEC3Q9UPP2 1182 aaPredicted RBP17.54■□□□□ 0.4
NUP54-216ENST00000514901 UQCRFS1P1P0C7P4 283 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 PHKA1P46020 1223 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 FSTL1Q12841 308 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 CCDC158Q5M9N0 1113 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 SMC1BQ8NDV3 1235 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 ZC3H15Q8WU90 426 aaKnown RBP17.53■□□□□ 0.4
NUP54-216ENST00000514901 MXD3Q9BW11 206 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 SUGT1Q9Y2Z0 365 aa17.53■□□□□ 0.4
NUP54-216ENST00000514901 PDS5AQ29RF7 1337 aaKnown RBP17.52■□□□□ 0.4
NUP54-216ENST00000514901 CHAF1AQ13111 956 aaPredicted RBP17.52■□□□□ 0.4
NUP54-216ENST00000514901 HDAC1Q13547 482 aaPredicted RBP17.52■□□□□ 0.4
NUP54-216ENST00000514901 CERS5Q8N5B7 392 aa17.52■□□□□ 0.4
NUP54-216ENST00000514901 EAF2Q96CJ1 260 aaPredicted RBP17.52■□□□□ 0.4
NUP54-216ENST00000514901 LRRCC1Q9C099 1032 aa17.52■□□□□ 0.4
NUP54-216ENST00000514901 CLEC11AQ9Y240 323 aa17.52■□□□□ 0.4
NUP54-216ENST00000514901 APBB1O00213 710 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 CENPBP07199 599 aaPredicted RBP17.51■□□□□ 0.39
NUP54-216ENST00000514901 CHADLQ6NUI6 762 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 SAMD7Q7Z3H4 446 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 AACSQ86V21 672 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 KIAA0825Q8IV33 1275 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 ZNF512BQ96KM6 892 aaPredicted RBP17.51■□□□□ 0.39
NUP54-216ENST00000514901 RWDD1Q9H446 243 aaPredicted RBP17.51■□□□□ 0.39
NUP54-216ENST00000514901 MYOZ2Q9NPC6 264 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 JAG2Q9Y219 1238 aa17.51■□□□□ 0.39
NUP54-216ENST00000514901 SHTN1A0MZ66 631 aa17.5■□□□□ 0.39
NUP54-216ENST00000514901 ARID4AP29374 1257 aaPredicted RBP17.5■□□□□ 0.39
NUP54-216ENST00000514901 KIF4BQ2VIQ3 1234 aa17.5■□□□□ 0.39
NUP54-216ENST00000514901 ZGPATQ8N5A5 531 aaKnown RBP17.5■□□□□ 0.39
NUP54-216ENST00000514901 DBNDD2Q9BQY9 259 aa17.5■□□□□ 0.39
NUP54-216ENST00000514901 CCDC8Q9H0W5 538 aaPredicted RBP17.5■□□□□ 0.39
NUP54-216ENST00000514901 IL1RAPL2Q9NP60 686 aa17.5■□□□□ 0.39
NUP54-216ENST00000514901 PGAP2Q9UHJ9 254 aa17.5■□□□□ 0.39
NUP54-216ENST00000514901 ARAP2Q8WZ64 1704 aa17.5■□□□□ 0.39
NUP54-216ENST00000514901 SALL1Q9NSC2 1324 aa17.49■□□□□ 0.39
NUP54-216ENST00000514901 IFIT2P09913 472 aaKnown RBP17.49■□□□□ 0.39
NUP54-216ENST00000514901 C1QTNF8P60827 252 aa17.49■□□□□ 0.39
NUP54-216ENST00000514901 TBC1D10BQ4KMP7 808 aaPredicted RBP17.49■□□□□ 0.39
NUP54-216ENST00000514901 TTC39AQ5SRH9 613 aa17.49■□□□□ 0.39
NUP54-216ENST00000514901 RBM26Q5T8P6 1007 aaKnown RBP17.49■□□□□ 0.39
NUP54-216ENST00000514901 TRPM4Q8TD43 1214 aa17.49■□□□□ 0.39
NUP54-216ENST00000514901 GCC1Q96CN9 775 aa17.49■□□□□ 0.39
NUP54-216ENST00000514901 MRIQ9BWK5 157 aa17.49■□□□□ 0.39
NUP54-216ENST00000514901 DBNLQ9UJU6 430 aaKnown RBP17.49■□□□□ 0.39
NUP54-216ENST00000514901 POTEIP0CG38 1075 aa17.48■□□□□ 0.39
NUP54-216ENST00000514901 POTEJP0CG39 1038 aa17.48■□□□□ 0.39
NUP54-216ENST00000514901 HIRAP54198 1017 aaPredicted RBP17.48■□□□□ 0.39
NUP54-216ENST00000514901 HDLBPQ00341 1268 aaKnown RBP17.48■□□□□ 0.39
NUP54-216ENST00000514901 RASGRF1Q13972 1273 aa17.48■□□□□ 0.39
NUP54-216ENST00000514901 MTMR14Q8NCE2 650 aa17.48■□□□□ 0.39
NUP54-216ENST00000514901 TTF2Q9UNY4 1162 aaKnown RBP17.48■□□□□ 0.39
NUP54-216ENST00000514901 MAST3O60307 1309 aa17.47■□□□□ 0.39
NUP54-216ENST00000514901 ZNF646O15015 1829 aaPredicted RBP17.47■□□□□ 0.39
NUP54-216ENST00000514901 F8W031 263 aaPredicted RBP17.47■□□□□ 0.39
NUP54-216ENST00000514901 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
NUP54-216ENST00000514901 SPTY2D1Q68D10 685 aaPredicted RBP17.47■□□□□ 0.39
NUP54-216ENST00000514901 SPATA5Q8NB90 893 aa17.47■□□□□ 0.39
NUP54-216ENST00000514901 SERPINA10Q9UK55 444 aa17.47■□□□□ 0.39
NUP54-216ENST00000514901 IGSF3O75054 1194 aa17.46■□□□□ 0.39
NUP54-216ENST00000514901 SCARF1Q14162 830 aa17.46■□□□□ 0.39
NUP54-216ENST00000514901 DLGAP5Q15398 846 aa17.46■□□□□ 0.39
NUP54-216ENST00000514901 CNTROBQ8N137 903 aa17.46■□□□□ 0.39
NUP54-216ENST00000514901 HMG20BQ9P0W2 317 aa17.46■□□□□ 0.39
NUP54-216ENST00000514901 ZBTB47Q9UFB7 747 aaPredicted RBP17.46■□□□□ 0.39
NUP54-216ENST00000514901 MYH13Q9UKX3 1938 aa17.45■□□□□ 0.38
NUP54-216ENST00000514901 EGFRP00533 1210 aa17.45■□□□□ 0.38
NUP54-216ENST00000514901 LDHBP07195 334 aaKnown RBP17.45■□□□□ 0.38
NUP54-216ENST00000514901 MCAMP43121 646 aa17.45■□□□□ 0.38
NUP54-216ENST00000514901 CFAP100Q494V2 611 aa17.45■□□□□ 0.38
NUP54-216ENST00000514901 DCPSQ96C86 337 aaKnown RBP17.45■□□□□ 0.38
NUP54-216ENST00000514901 TLR7Q9NYK1 1049 aaKnown RBP17.45■□□□□ 0.38
NUP54-216ENST00000514901 WNT10BO00744 389 aa17.44■□□□□ 0.38
NUP54-216ENST00000514901 MYO1BO43795 1136 aa17.44■□□□□ 0.38
NUP54-216ENST00000514901 RBM5P52756 815 aaKnown RBP eCLIP17.44■□□□□ 0.38
NUP54-216ENST00000514901 MAP1SQ66K74 1059 aaPredicted RBP17.44■□□□□ 0.38
NUP54-216ENST00000514901 CDC37L1Q7L3B6 337 aa17.44■□□□□ 0.38
NUP54-216ENST00000514901 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.44■□□□□ 0.38
NUP54-216ENST00000514901 TEKT1Q969V4 418 aa17.44■□□□□ 0.38
NUP54-216ENST00000514901 ZBED3Q96IU2 234 aaPredicted RBP17.44■□□□□ 0.38
NUP54-216ENST00000514901 PITPNM2Q9BZ72 1349 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms