RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ECM29Q5VYK3 1845 aa26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 FKTNO75072 461 aa26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 SLC34A2O95436 690 aa26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 ZBTB48P10074 688 aaPredicted RBP26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 RBM5P52756 815 aaKnown RBP eCLIP26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 SOX10P56693 466 aa26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 EXOSC9Q06265 439 aaKnown RBP26.61■■□□□ 1.85
SQSTM1-210ENST00000506042 GPR25O00155 361 aa26.6■■□□□ 1.85
SQSTM1-210ENST00000506042 GRM8O00222 908 aa26.6■■□□□ 1.85
SQSTM1-210ENST00000506042 IL1R1P14778 569 aa26.6■■□□□ 1.85
SQSTM1-210ENST00000506042 IREB2P48200 963 aaKnown RBP26.6■■□□□ 1.85
SQSTM1-210ENST00000506042 PTPN12Q05209 780 aaKnown RBP26.6■■□□□ 1.85
SQSTM1-210ENST00000506042 CFHR5Q9BXR6 569 aa26.6■■□□□ 1.85
SQSTM1-210ENST00000506042 TAF5LO75529 589 aa26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 ALDH1L1O75891 902 aa26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 ZEB1P37275 1124 aaPredicted RBP26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 MKRN3Q13064 507 aaKnown RBP26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 SPRYD7Q5W111 196 aa26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 FBXO46Q6PJ61 603 aaPredicted RBP26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 LMBR1LQ6UX01 489 aa26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 HPS5Q9UPZ3 1129 aa26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 SALL2Q9Y467 1007 aaPredicted RBP26.59■■□□□ 1.85
SQSTM1-210ENST00000506042 KLRK1P26718 216 aa26.58■■□□□ 1.85
SQSTM1-210ENST00000506042 BEND3Q5T5X7 828 aa26.58■■□□□ 1.85
SQSTM1-210ENST00000506042 LDLRAD1Q5T700 205 aa26.58■■□□□ 1.85
SQSTM1-210ENST00000506042 ZBED3Q96IU2 234 aaPredicted RBP26.58■■□□□ 1.85
SQSTM1-210ENST00000506042 VEZTQ9HBM0 779 aa26.58■■□□□ 1.85
SQSTM1-210ENST00000506042 PLIN1O60240 522 aa26.57■■□□□ 1.84
SQSTM1-210ENST00000506042 FOXO4P98177 505 aa26.57■■□□□ 1.84
SQSTM1-210ENST00000506042 CFAP100Q494V2 611 aa26.57■■□□□ 1.84
SQSTM1-210ENST00000506042 HELBQ8NG08 1087 aaPredicted RBP26.57■■□□□ 1.84
SQSTM1-210ENST00000506042 SRCIN1Q9C0H9 1055 aa26.57■■□□□ 1.84
SQSTM1-210ENST00000506042 F8W031 263 aaPredicted RBP26.56■■□□□ 1.84
SQSTM1-210ENST00000506042 MAP3K11Q16584 847 aa26.56■■□□□ 1.84
SQSTM1-210ENST00000506042 SPDYE2BA6NHP3 402 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 SPDYE6P0CI01 402 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 TNNI2P48788 182 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 UBE4AQ14139 1066 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 CCDC184Q52MB2 194 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 SLC4A10Q6U841 1118 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 VPS37DQ86XT2 251 aa26.55■■□□□ 1.84
SQSTM1-210ENST00000506042 F6X3S4 739 aa26.54■■□□□ 1.84
SQSTM1-210ENST00000506042 WDHD1O75717 1129 aaPredicted RBP26.53■■□□□ 1.84
SQSTM1-210ENST00000506042 ANKRD13AQ8IZ07 590 aa26.53■■□□□ 1.84
SQSTM1-210ENST00000506042 A0A1B0GUL6 1792 aa26.52■■□□□ 1.84
SQSTM1-210ENST00000506042 HIBADHP31937 336 aaKnown RBP26.52■■□□□ 1.84
SQSTM1-210ENST00000506042 ARHGEF6Q15052 776 aa26.52■■□□□ 1.84
SQSTM1-210ENST00000506042 MROH5Q6ZUA9 1318 aa26.52■■□□□ 1.84
SQSTM1-210ENST00000506042 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.52■■□□□ 1.84
SQSTM1-210ENST00000506042 SERPINA10Q9UK55 444 aa26.52■■□□□ 1.84
SQSTM1-210ENST00000506042 FAM205AQ6ZU69 1335 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 CLRN2A0PK11 232 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 FRAT2O75474 233 aaPredicted RBP26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 CAVIN4Q5BKX8 364 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 MFSD14BQ5SR56 506 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 IFNL1Q8IU54 200 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 CERS5Q8N5B7 392 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 ERO1AQ96HE7 468 aa26.51■■□□□ 1.83
SQSTM1-210ENST00000506042 WNK4Q96J92 1243 aa26.5■■□□□ 1.83
SQSTM1-210ENST00000506042 INTS3Q68E01 1043 aaKnown RBP26.49■■□□□ 1.83
SQSTM1-210ENST00000506042 TBC1D22AQ8WUA7 517 aa26.49■■□□□ 1.83
SQSTM1-210ENST00000506042 HOOK2Q96ED9 719 aa26.49■■□□□ 1.83
SQSTM1-210ENST00000506042 TTF2Q9UNY4 1162 aaKnown RBP26.49■■□□□ 1.83
SQSTM1-210ENST00000506042 IRS2Q9Y4H2 1338 aa26.48■■□□□ 1.83
SQSTM1-210ENST00000506042 RASA3Q14644 834 aa26.48■■□□□ 1.83
SQSTM1-210ENST00000506042 PRPF38BQ5VTL8 546 aaKnown RBP26.48■■□□□ 1.83
SQSTM1-210ENST00000506042 TMOD2Q9NZR1 351 aa26.48■■□□□ 1.83
SQSTM1-210ENST00000506042 ZNF594Q96JF6 807 aaPredicted RBP26.47■■□□□ 1.83
SQSTM1-210ENST00000506042 PRMT6Q96LA8 375 aaPredicted RBP26.47■■□□□ 1.83
SQSTM1-210ENST00000506042 PCDH10Q9P2E7 1040 aa26.47■■□□□ 1.83
SQSTM1-210ENST00000506042 SNAP23O00161 211 aa26.46■■□□□ 1.83
SQSTM1-210ENST00000506042 TDRD7Q8NHU6 1098 aaKnown RBP26.46■■□□□ 1.83
SQSTM1-210ENST00000506042 MAST3O60307 1309 aa26.45■■□□□ 1.83
SQSTM1-210ENST00000506042 TRIM17Q9Y577 477 aa26.45■■□□□ 1.82
SQSTM1-210ENST00000506042 CSADQ9Y600 493 aa26.45■■□□□ 1.82
SQSTM1-210ENST00000506042 SPDYE2Q495Y8 402 aa26.44■■□□□ 1.82
SQSTM1-210ENST00000506042 NBPF12Q5TAG4 269 aaPredicted RBP26.44■■□□□ 1.82
SQSTM1-210ENST00000506042 FAM9BQ8IZU0 186 aa26.44■■□□□ 1.82
SQSTM1-210ENST00000506042 JAG2Q9Y219 1238 aa26.44■■□□□ 1.82
SQSTM1-210ENST00000506042 ARAP2Q8WZ64 1704 aa26.44■■□□□ 1.82
SQSTM1-210ENST00000506042 LAMB1P07942 1786 aa26.43■■□□□ 1.82
SQSTM1-210ENST00000506042 HDLBPQ00341 1268 aaKnown RBP26.43■■□□□ 1.82
SQSTM1-210ENST00000506042 METTL24Q5JXM2 366 aa26.43■■□□□ 1.82
SQSTM1-210ENST00000506042 ZNF70Q9UC06 446 aaPredicted RBP26.43■■□□□ 1.82
SQSTM1-210ENST00000506042 PTPRCP08575 1304 aa26.42■■□□□ 1.82
SQSTM1-210ENST00000506042 GYG1P46976 350 aa26.42■■□□□ 1.82
SQSTM1-210ENST00000506042 EPHA10Q5JZY3 1008 aa26.42■■□□□ 1.82
SQSTM1-210ENST00000506042 DZIP1LQ8IYY4 767 aaKnown RBP26.42■■□□□ 1.82
SQSTM1-210ENST00000506042 GCC1Q96CN9 775 aa26.42■■□□□ 1.82
SQSTM1-210ENST00000506042 CLMNQ96JQ2 1002 aa26.42■■□□□ 1.82
SQSTM1-210ENST00000506042 ZNF316A6NFI3 1004 aaPredicted RBP26.41■■□□□ 1.82
SQSTM1-210ENST00000506042 TEKT1Q969V4 418 aa26.41■■□□□ 1.82
SQSTM1-210ENST00000506042 USP2O75604 605 aaPredicted RBP26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 CRKP46108 304 aa26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 OPTNQ96CV9 577 aa26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 FAM84BQ96KN1 310 aaPredicted RBP26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 TDRD3Q9H7E2 651 aaKnown RBP26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 FZD1Q9UP38 647 aa26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 SSC5DA1L4H1 1573 aa26.4■■□□□ 1.82
SQSTM1-210ENST00000506042 IFIT1P09914 478 aaKnown RBP26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms