RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 MROH5Q6ZUA9 1318 aa12.41□□□□□ -0.42
NUP54-203ENST00000504173 SURF6O75683 361 aaKnown RBP12.41□□□□□ -0.42
NUP54-203ENST00000504173 IL15P40933 162 aaPredicted RBP12.41□□□□□ -0.42
NUP54-203ENST00000504173 G3BP1Q13283 466 aaKnown RBP eCLIP12.41□□□□□ -0.42
NUP54-203ENST00000504173 NOM1Q5C9Z4 860 aaKnown RBP12.41□□□□□ -0.42
NUP54-203ENST00000504173 HELBQ8NG08 1087 aaPredicted RBP12.41□□□□□ -0.42
NUP54-203ENST00000504173 CSRNP1Q96S65 589 aa12.41□□□□□ -0.42
NUP54-203ENST00000504173 ZNF408Q9H9D4 720 aa12.41□□□□□ -0.42
NUP54-203ENST00000504173 GGA1Q9UJY5 639 aa12.41□□□□□ -0.42
NUP54-203ENST00000504173 AKAP11Q9UKA4 1901 aa12.41□□□□□ -0.42
NUP54-203ENST00000504173 RANBP2P49792 3224 aaKnown RBP12.4□□□□□ -0.42
NUP54-203ENST00000504173 C6orf229H3BNL8 230 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 TAF5LO75529 589 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 UFL1O94874 794 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 ATP2B4P23634 1241 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 KCNJ4P48050 445 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 ATG9AQ7Z3C6 839 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 SUPT20HQ8NEM7 779 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 PODXL2Q9NZ53 605 aa12.4□□□□□ -0.42
NUP54-203ENST00000504173 NOP58Q9Y2X3 529 aaKnown RBP12.4□□□□□ -0.42
NUP54-203ENST00000504173 SLC10A3P09131 477 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 HSP90AB4PQ58FF6 505 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 TBC1D16Q8TBP0 767 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 RTFDC1Q9BY42 306 aaPredicted RBP12.39□□□□□ -0.43
NUP54-203ENST00000504173 CEP126Q9P2H0 1117 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 HDAC9Q9UKV0 1011 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 EXOC6BQ9Y2D4 811 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 LEMD3Q9Y2U8 911 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 DUOX1Q9NRD9 1551 aa12.39□□□□□ -0.43
NUP54-203ENST00000504173 ZNF804BA4D1E1 1349 aa12.38□□□□□ -0.43
NUP54-203ENST00000504173 A0A1B0GUL6 1792 aa12.38□□□□□ -0.43
NUP54-203ENST00000504173 ZNF296Q8WUU4 475 aaPredicted RBP12.38□□□□□ -0.43
NUP54-203ENST00000504173 OTUD5Q96G74 571 aa12.38□□□□□ -0.43
NUP54-203ENST00000504173 EYA3Q99504 573 aa12.38□□□□□ -0.43
NUP54-203ENST00000504173 POLLQ9UGP5 575 aa12.38□□□□□ -0.43
NUP54-203ENST00000504173 RBBP6Q7Z6E9 1792 aaKnown RBP12.38□□□□□ -0.43
NUP54-203ENST00000504173 APBB1O00213 710 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 PPIP5K2O43314 1243 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 PDE8BO95263 885 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 ZNF157P51786 506 aaPredicted RBP12.37□□□□□ -0.43
NUP54-203ENST00000504173 TFCP2Q12800 502 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 HDAC1Q13547 482 aaPredicted RBP12.37□□□□□ -0.43
NUP54-203ENST00000504173 UBE4AQ14139 1066 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 PUM3Q15397 648 aaKnown RBP12.37□□□□□ -0.43
NUP54-203ENST00000504173 ERC1Q8IUD2 1116 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 VGLL2Q8N8G2 317 aa12.37□□□□□ -0.43
NUP54-203ENST00000504173 RWDD1Q9H446 243 aaPredicted RBP12.37□□□□□ -0.43
NUP54-203ENST00000504173 POTEFA5A3E0 1075 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 SNAP23O00161 211 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 RIMBP2O15034 1052 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 RAB11FIP3O75154 756 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 SASH1O94885 1247 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 HIRAP54198 1017 aaPredicted RBP12.36□□□□□ -0.43
NUP54-203ENST00000504173 AOC3Q16853 763 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 WASHC4Q2M389 1173 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 LARGE2Q8N3Y3 721 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 ZC3H12CQ9C0D7 883 aaKnown RBP12.36□□□□□ -0.43
NUP54-203ENST00000504173 DCTPP1Q9H773 170 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 GBA2Q9HCG7 927 aaPredicted RBP12.36□□□□□ -0.43
NUP54-203ENST00000504173 AKAP2Q9Y2D5 859 aa12.36□□□□□ -0.43
NUP54-203ENST00000504173 MED23Q9ULK4 1368 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 WTIPA6NIX2 430 aaPredicted RBP12.35□□□□□ -0.43
NUP54-203ENST00000504173 IFIT1P09914 478 aaKnown RBP12.35□□□□□ -0.43
NUP54-203ENST00000504173 SLC5A1P13866 664 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 KIAA2012Q0VF49 1180 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 ATP2B3Q16720 1220 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 C2orf69Q8N8R5 385 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 LPIN2Q92539 896 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 KIF1BPQ96EK5 621 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 VPS33BQ9H267 617 aa12.35□□□□□ -0.43
NUP54-203ENST00000504173 G3V3G9 751 aa12.34□□□□□ -0.43
NUP54-203ENST00000504173 FGFR2P21802 821 aa12.34□□□□□ -0.43
NUP54-203ENST00000504173 KLRK1P26718 216 aa12.34□□□□□ -0.43
NUP54-203ENST00000504173 MAPK8IP2Q13387 824 aaPredicted RBP12.34□□□□□ -0.43
NUP54-203ENST00000504173 DCAF8Q5TAQ9 597 aa12.34□□□□□ -0.43
NUP54-203ENST00000504173 RHPN1Q8TCX5 695 aa12.34□□□□□ -0.43
NUP54-203ENST00000504173 KIAA0100Q14667 2235 aaKnown RBP12.33□□□□□ -0.44
NUP54-203ENST00000504173 A0A1B0GUL7 405 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 IGHDP01880 384 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 DOK7Q18PE1 504 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 TNNI3KQ59H18 835 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 ERICH6BQ5W0A0 696 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 C15orf52Q6ZUT6 534 aaKnown RBP12.33□□□□□ -0.44
NUP54-203ENST00000504173 USP48Q86UV5 1035 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 NIM1KQ8IY84 436 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 NEUROD6Q96NK8 337 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 LRRCC1Q9C099 1032 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 BCL11AQ9H165 835 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 IL1RAPL2Q9NP60 686 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 GPR108Q9NPR9 543 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.33□□□□□ -0.44
NUP54-203ENST00000504173 FPGT-TNNI3KV9GXZ4 949 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 ZNF609O15014 1411 aa12.33□□□□□ -0.44
NUP54-203ENST00000504173 GPR25O00155 361 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 GYG1P46976 350 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 GMPSP49915 693 aaPredicted RBP12.32□□□□□ -0.44
NUP54-203ENST00000504173 TIMM10P62072 90 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 CXCL9Q07325 125 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 CAVIN4Q5BKX8 364 aa12.32□□□□□ -0.44
NUP54-203ENST00000504173 ZNF804AQ7Z570 1209 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms