RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 STRIP1Q5VSL9 837 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 LDHAL6AQ6ZMR3 332 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 RASAL3Q86YV0 1011 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 CDAN1Q8IWY9 1227 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 ANKRD44Q8N8A2 993 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 C2orf69Q8N8R5 385 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 ABHD8Q96I13 439 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 SRCIN1Q9C0H9 1055 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 TNNQ9UQP3 1299 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 OTOFQ9HC10 1997 aa11.3□□□□□ -0.6
HDAC3-211ENST00000491581 TRPA1O75762 1119 aa11.29□□□□□ -0.6
HDAC3-211ENST00000491581 CSRNP1Q96S65 589 aa11.29□□□□□ -0.6
HDAC3-211ENST00000491581 CHMP4AQ9BY43 222 aa11.29□□□□□ -0.6
HDAC3-211ENST00000491581 ANKRD2Q9GZV1 360 aa11.29□□□□□ -0.6
HDAC3-211ENST00000491581 CNNM1Q9NRU3 951 aa11.29□□□□□ -0.6
HDAC3-211ENST00000491581 SLC10A3P09131 477 aa11.28□□□□□ -0.6
HDAC3-211ENST00000491581 BRPF1P55201 1214 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-211ENST00000491581 CCDC57Q2TAC2 916 aa11.28□□□□□ -0.6
HDAC3-211ENST00000491581 TAF7LQ5H9L4 462 aa11.28□□□□□ -0.6
HDAC3-211ENST00000491581 ZBED3Q96IU2 234 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-211ENST00000491581 HHIPL1Q96JK4 782 aa11.28□□□□□ -0.6
HDAC3-211ENST00000491581 PRMT6Q96LA8 375 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-211ENST00000491581 BEGAINQ9BUH8 593 aa11.28□□□□□ -0.6
HDAC3-211ENST00000491581 MYH13Q9UKX3 1938 aa11.27□□□□□ -0.6
HDAC3-211ENST00000491581 CCDC85CA6NKD9 419 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 ALDH1L1O75891 902 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 NOGQ13253 232 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 TTLL12Q14166 644 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-211ENST00000491581 MCOLN1Q9GZU1 580 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 USP44Q9H0E7 712 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 R3HDMLQ9H3Y0 253 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 RNF186Q9NXI6 227 aa11.27□□□□□ -0.61
HDAC3-211ENST00000491581 IL1R1P14778 569 aa11.26□□□□□ -0.61
HDAC3-211ENST00000491581 PTPN12Q05209 780 aaKnown RBP11.26□□□□□ -0.61
HDAC3-211ENST00000491581 CFAP100Q494V2 611 aa11.26□□□□□ -0.61
HDAC3-211ENST00000491581 CLMNQ96JQ2 1002 aa11.26□□□□□ -0.61
HDAC3-211ENST00000491581 FAM84BQ96KN1 310 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-211ENST00000491581 RIPOR2Q9Y4F9 1068 aa11.26□□□□□ -0.61
HDAC3-211ENST00000491581 UTYO14607 1347 aa11.26□□□□□ -0.61
HDAC3-211ENST00000491581 TBC1D8O95759 1140 aa11.25□□□□□ -0.61
HDAC3-211ENST00000491581 CHAF1AQ13111 956 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-211ENST00000491581 DGKZQ13574 1117 aa11.25□□□□□ -0.61
HDAC3-211ENST00000491581 OGFOD1Q8N543 542 aa11.25□□□□□ -0.61
HDAC3-211ENST00000491581 PITPNM2Q9BZ72 1349 aa11.25□□□□□ -0.61
HDAC3-211ENST00000491581 COL1A1P02452 1464 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-211ENST00000491581 E9PSI1 815 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 RBM5P52756 815 aaKnown RBP eCLIP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 CACNB3P54284 484 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 DLGAP5Q15398 846 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 RABL6Q3YEC7 729 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 NBPF12Q5TAG4 269 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 C15orf52Q6ZUT6 534 aaKnown RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 ZNF804AQ7Z570 1209 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 TRMT2AQ8IZ69 625 aaKnown RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 VGLL2Q8N8G2 317 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 TDRD7Q8NHU6 1098 aaKnown RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 TDRD3Q9H7E2 651 aaKnown RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 VEZTQ9HBM0 779 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 SMC4Q9NTJ3 1288 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 NOB1Q9ULX3 412 aaKnown RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 ANGEL1Q9UNK9 670 aaKnown RBP11.24□□□□□ -0.61
HDAC3-211ENST00000491581 MYO3BQ8WXR4 1341 aa11.24□□□□□ -0.61
HDAC3-211ENST00000491581 ABCB7O75027 752 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 RFX5P48382 616 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-211ENST00000491581 BCAMP50895 628 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 METTL24Q5JXM2 366 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 MFSD14BQ5SR56 506 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 CCDC102AQ96A19 550 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 SIL1Q9H173 461 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 DEFB129Q9H1M3 183 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 PA2G4Q9UQ80 394 aaKnown RBP11.23□□□□□ -0.61
HDAC3-211ENST00000491581 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.23□□□□□ -0.61
HDAC3-211ENST00000491581 ZSWIM8A7E2V4 1837 aa11.23□□□□□ -0.61
HDAC3-211ENST00000491581 SPDYE2BA6NHP3 402 aa11.22□□□□□ -0.61
HDAC3-211ENST00000491581 SPDYE6P0CI01 402 aa11.22□□□□□ -0.61
HDAC3-211ENST00000491581 HIBADHP31937 336 aaKnown RBP11.22□□□□□ -0.61
HDAC3-211ENST00000491581 GJA5P36382 358 aa11.22□□□□□ -0.61
HDAC3-211ENST00000491581 HDAC9Q9UKV0 1011 aa11.22□□□□□ -0.61
HDAC3-211ENST00000491581 TTF2Q9UNY4 1162 aaKnown RBP11.22□□□□□ -0.61
HDAC3-211ENST00000491581 LAMB1P07942 1786 aa11.21□□□□□ -0.61
HDAC3-211ENST00000491581 PTPRCP08575 1304 aa11.21□□□□□ -0.61
HDAC3-211ENST00000491581 FAM205AQ6ZU69 1335 aa11.21□□□□□ -0.61
HDAC3-211ENST00000491581 TCP10L2B9ZVM9 353 aa11.21□□□□□ -0.61
HDAC3-211ENST00000491581 ATG9AQ7Z3C6 839 aa11.21□□□□□ -0.61
HDAC3-211ENST00000491581 APOBEC3FQ8IUX4 373 aaKnown RBP11.21□□□□□ -0.61
HDAC3-211ENST00000491581 MEIS3Q99687 375 aa11.21□□□□□ -0.61
HDAC3-211ENST00000491581 SOX10P56693 466 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 CAP1Q01518 475 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 UBE4AQ14139 1066 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 RASA3Q14644 834 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 LDLRAD1Q5T700 205 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 FBXO33Q7Z6M2 555 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 TMEM39BQ9GZU3 492 aa11.2□□□□□ -0.62
HDAC3-211ENST00000491581 ZNF70Q9UC06 446 aaPredicted RBP11.2□□□□□ -0.62
HDAC3-211ENST00000491581 LRRFIP2Q9Y608 721 aaKnown RBP11.2□□□□□ -0.62
HDAC3-211ENST00000491581 USP2O75604 605 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-211ENST00000491581 BCAR3O75815 825 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 PDE8BO95263 885 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 SLURP2P0DP57 97 aa11.19□□□□□ -0.62
HDAC3-211ENST00000491581 FGFR2P21802 821 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms