RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 MOB2Q70IA6 237 aa15.48■□□□□ 0.07
SDC3-204ENST00000487984 USP44Q9H0E7 712 aa15.48■□□□□ 0.07
SDC3-204ENST00000487984 SMC4Q9NTJ3 1288 aa15.48■□□□□ 0.07
SDC3-204ENST00000487984 JAG2Q9Y219 1238 aa15.48■□□□□ 0.07
SDC3-204ENST00000487984 RIPOR2Q9Y4F9 1068 aa15.48■□□□□ 0.07
SDC3-204ENST00000487984 KIF23Q02241 960 aaPredicted RBP15.47■□□□□ 0.07
SDC3-204ENST00000487984 RASAL3Q86YV0 1011 aa15.47■□□□□ 0.07
SDC3-204ENST00000487984 PAPPA2Q9BXP8 1791 aa15.47■□□□□ 0.07
SDC3-204ENST00000487984 MROH5Q6ZUA9 1318 aa15.46■□□□□ 0.07
SDC3-204ENST00000487984 F8W031 263 aaPredicted RBP15.46■□□□□ 0.07
SDC3-204ENST00000487984 GYG1P46976 350 aa15.46■□□□□ 0.07
SDC3-204ENST00000487984 FKBP1AP62942 108 aaKnown RBP15.46■□□□□ 0.07
SDC3-204ENST00000487984 DLGAP5Q15398 846 aa15.46■□□□□ 0.07
SDC3-204ENST00000487984 LRRC24Q50LG9 513 aa15.46■□□□□ 0.07
SDC3-204ENST00000487984 APOBEC3FQ8IUX4 373 aaKnown RBP15.46■□□□□ 0.07
SDC3-204ENST00000487984 MTMR14Q8NCE2 650 aa15.46■□□□□ 0.07
SDC3-204ENST00000487984 FAM84BQ96KN1 310 aaPredicted RBP15.46■□□□□ 0.07
SDC3-204ENST00000487984 PCDHAC2Q9Y5I4 1007 aa15.46■□□□□ 0.07
SDC3-204ENST00000487984 UBE2Q2LH0YL09 131 aa15.45■□□□□ 0.06
SDC3-204ENST00000487984 CT47B1P0C2W7 299 aaPredicted RBP15.45■□□□□ 0.06
SDC3-204ENST00000487984 HIBADHP31937 336 aaKnown RBP15.45■□□□□ 0.06
SDC3-204ENST00000487984 TDRD7Q8NHU6 1098 aaKnown RBP15.45■□□□□ 0.06
SDC3-204ENST00000487984 KLHDC4Q8TBB5 520 aa15.45■□□□□ 0.06
SDC3-204ENST00000487984 FAM205AQ6ZU69 1335 aa15.44■□□□□ 0.06
SDC3-204ENST00000487984 NF2P35240 595 aa15.44■□□□□ 0.06
SDC3-204ENST00000487984 TTLL12Q14166 644 aaPredicted RBP15.44■□□□□ 0.06
SDC3-204ENST00000487984 CFAP100Q494V2 611 aa15.44■□□□□ 0.06
SDC3-204ENST00000487984 METTL24Q5JXM2 366 aa15.44■□□□□ 0.06
SDC3-204ENST00000487984 VGLL2Q8N8G2 317 aa15.44■□□□□ 0.06
SDC3-204ENST00000487984 CSRNP1Q96S65 589 aa15.44■□□□□ 0.06
SDC3-204ENST00000487984 SPDYE2BA6NHP3 402 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 SPDYE6P0CI01 402 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 MFSD14BQ5SR56 506 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 ABHD8Q96I13 439 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 DEFB129Q9H1M3 183 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 SAGE1Q9NXZ1 904 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 NOB1Q9ULX3 412 aaKnown RBP15.43■□□□□ 0.06
SDC3-204ENST00000487984 AOX1Q06278 1338 aa15.43■□□□□ 0.06
SDC3-204ENST00000487984 COL1A1P02452 1464 aaPredicted RBP15.42■□□□□ 0.06
SDC3-204ENST00000487984 CLRN2A0PK11 232 aa15.42■□□□□ 0.06
SDC3-204ENST00000487984 PDE8BO95263 885 aa15.42■□□□□ 0.06
SDC3-204ENST00000487984 PRKG1Q13976 671 aa15.42■□□□□ 0.06
SDC3-204ENST00000487984 FBXO33Q7Z6M2 555 aa15.42■□□□□ 0.06
SDC3-204ENST00000487984 PRMT6Q96LA8 375 aaPredicted RBP15.42■□□□□ 0.06
SDC3-204ENST00000487984 RNF186Q9NXI6 227 aa15.42■□□□□ 0.06
SDC3-204ENST00000487984 MYO1BO43795 1136 aa15.41■□□□□ 0.06
SDC3-204ENST00000487984 TRPA1O75762 1119 aa15.41■□□□□ 0.06
SDC3-204ENST00000487984 RFX5P48382 616 aaPredicted RBP15.41■□□□□ 0.06
SDC3-204ENST00000487984 RBM5P52756 815 aaKnown RBP eCLIP15.41■□□□□ 0.06
SDC3-204ENST00000487984 VPS37DQ86XT2 251 aa15.41■□□□□ 0.06
SDC3-204ENST00000487984 IQSEC3Q9UPP2 1182 aaPredicted RBP15.41■□□□□ 0.06
SDC3-204ENST00000487984 RARSP54136 660 aaKnown RBP15.4■□□□□ 0.06
SDC3-204ENST00000487984 PTPN12Q05209 780 aaKnown RBP15.4■□□□□ 0.06
SDC3-204ENST00000487984 ARMC9Q7Z3E5 817 aa15.4■□□□□ 0.06
SDC3-204ENST00000487984 REM2Q8IYK8 340 aaPredicted RBP15.4■□□□□ 0.06
SDC3-204ENST00000487984 API5Q9BZZ5 524 aaKnown RBP15.4■□□□□ 0.06
SDC3-204ENST00000487984 VEZTQ9HBM0 779 aa15.4■□□□□ 0.06
SDC3-204ENST00000487984 TTF2Q9UNY4 1162 aaKnown RBP15.4■□□□□ 0.06
SDC3-204ENST00000487984 FZD1Q9UP38 647 aa15.4■□□□□ 0.06
SDC3-204ENST00000487984 PPP2R3BQ9Y5P8 575 aa15.4■□□□□ 0.06
SDC3-204ENST00000487984 EYA2O00167 538 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 UBTFL1P0CB47 393 aaPredicted RBP15.39■□□□□ 0.05
SDC3-204ENST00000487984 FGFR2P21802 821 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 BCAMP50895 628 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 CHAF1AQ13111 956 aaPredicted RBP15.39■□□□□ 0.05
SDC3-204ENST00000487984 PUM3Q15397 648 aaKnown RBP15.39■□□□□ 0.05
SDC3-204ENST00000487984 CAVIN4Q5BKX8 364 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 MCOLN1Q9GZU1 580 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 SERPINA10Q9UK55 444 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 ANGEL1Q9UNK9 670 aaKnown RBP15.39■□□□□ 0.05
SDC3-204ENST00000487984 SSC5DA1L4H1 1573 aa15.39■□□□□ 0.05
SDC3-204ENST00000487984 MKRN3Q13064 507 aaKnown RBP15.38■□□□□ 0.05
SDC3-204ENST00000487984 GRIK5Q16478 980 aa15.38■□□□□ 0.05
SDC3-204ENST00000487984 LDLRAD1Q5T700 205 aa15.38■□□□□ 0.05
SDC3-204ENST00000487984 KIF16BQ96L93 1317 aa15.38■□□□□ 0.05
SDC3-204ENST00000487984 FRAT2O75474 233 aaPredicted RBP15.37■□□□□ 0.05
SDC3-204ENST00000487984 IFIT1P09914 478 aaKnown RBP15.37■□□□□ 0.05
SDC3-204ENST00000487984 SPDYE2Q495Y8 402 aa15.37■□□□□ 0.05
SDC3-204ENST00000487984 ATG9AQ7Z3C6 839 aa15.37■□□□□ 0.05
SDC3-204ENST00000487984 DZIP1LQ8IYY4 767 aaKnown RBP15.37■□□□□ 0.05
SDC3-204ENST00000487984 TBC1D22AQ8WUA7 517 aa15.37■□□□□ 0.05
SDC3-204ENST00000487984 ZNF70Q9UC06 446 aaPredicted RBP15.37■□□□□ 0.05
SDC3-204ENST00000487984 CASP8AP2Q9UKL3 1982 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 CRKP46108 304 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 DGKZQ13574 1117 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 RASA3Q14644 834 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 MAP3K11Q16584 847 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 SUPT20HL1Q3ZLR7 823 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 NBPF12Q5TAG4 269 aaPredicted RBP15.36■□□□□ 0.05
SDC3-204ENST00000487984 MEIS3Q99687 375 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 SIL1Q9H173 461 aa15.36■□□□□ 0.05
SDC3-204ENST00000487984 TDRD3Q9H7E2 651 aaKnown RBP15.36■□□□□ 0.05
SDC3-204ENST00000487984 LRRFIP2Q9Y608 721 aaKnown RBP15.36■□□□□ 0.05
SDC3-204ENST00000487984 PPP1R12BO60237 982 aaPredicted RBP15.35■□□□□ 0.05
SDC3-204ENST00000487984 SLC5A1P13866 664 aa15.35■□□□□ 0.05
SDC3-204ENST00000487984 TM4SF4P48230 202 aa15.35■□□□□ 0.05
SDC3-204ENST00000487984 TNFAIP1Q13829 316 aa15.35■□□□□ 0.05
SDC3-204ENST00000487984 SPRYD7Q5W111 196 aa15.35■□□□□ 0.05
SDC3-204ENST00000487984 LPIN2Q92539 896 aa15.35■□□□□ 0.05
SDC3-204ENST00000487984 ARHGAP45Q92619 1136 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms