RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 TRIM27P14373 513 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 IARSP41252 1262 aaKnown RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 FOSBP53539 338 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 FMR1Q06787 632 aaKnown RBP eCLIP7.27□□□□□ -1.25
CUX1-208ENST00000485792 RABL6Q3YEC7 729 aaPredicted RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 PPP4R3BQ5MIZ7 849 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 RBM26Q5T8P6 1007 aaKnown RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 DDX46Q7L014 1031 aaKnown RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 KLHDC4Q8TBB5 520 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 ZNF594Q96JF6 807 aaPredicted RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 MEIS3Q99687 375 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 EPAS1Q99814 870 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 PUS3Q9BZE2 481 aaKnown RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 USP44Q9H0E7 712 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 NOB1Q9ULX3 412 aaKnown RBP7.27□□□□□ -1.25
CUX1-208ENST00000485792 PCDHGA10Q9Y5H3 936 aa7.27□□□□□ -1.25
CUX1-208ENST00000485792 CDK5RAP2Q96SN8 1893 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 GRM8O00222 908 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 HTRA3P83110 453 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 KIAA2012Q0VF49 1180 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 CCDC152Q4G0S7 254 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 TYW1BQ6NUM6 668 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 DLK2Q6UY11 383 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 VGLL2Q8N8G2 317 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 TBC1D16Q8TBP0 767 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 BICC1Q9H694 974 aaKnown RBP7.26□□□□□ -1.25
CUX1-208ENST00000485792 SMC4Q9NTJ3 1288 aa7.26□□□□□ -1.25
CUX1-208ENST00000485792 BSDC1Q9NW68 430 aaPredicted RBP7.26□□□□□ -1.25
CUX1-208ENST00000485792 ASTN2O75129 1339 aaPredicted RBP7.26□□□□□ -1.25
CUX1-208ENST00000485792 SSC5DA1L4H1 1573 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 SIPA1L1O43166 1804 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 DOCK2Q92608 1830 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 PBX2P40425 430 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 C20orf194Q5TEA3 1177 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 INTS3Q68E01 1043 aaKnown RBP7.25□□□□□ -1.25
CUX1-208ENST00000485792 MPNDQ8N594 471 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 ZNF454Q8N9F8 522 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 FBXW7Q969H0 707 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 MXD3Q9BW11 206 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 SRCIN1Q9C0H9 1055 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 GPBP1L1Q9HC44 474 aaPredicted RBP7.25□□□□□ -1.25
CUX1-208ENST00000485792 KDM2BQ8NHM5 1336 aa7.25□□□□□ -1.25
CUX1-208ENST00000485792 DDX60LQ5H9U9 1706 aaKnown RBP7.24□□□□□ -1.25
CUX1-208ENST00000485792 MAST2Q6P0Q8 1798 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 TOMM70O94826 608 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 ITGA6P23229 1130 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 HIRAP54198 1017 aaPredicted RBP7.24□□□□□ -1.25
CUX1-208ENST00000485792 C1QTNF8P60827 252 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 CXCL9Q07325 125 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 TPRNQ4KMQ1 711 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 LRRC24Q50LG9 513 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 LMBR1LQ6UX01 489 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 C15orf52Q6ZUT6 534 aaKnown RBP7.24□□□□□ -1.25
CUX1-208ENST00000485792 GPC2Q8N158 579 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 TRPM4Q8TD43 1214 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 DBNDD1Q9H9R9 158 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 RRAGCQ9HB90 399 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 MINPP1Q9UNW1 487 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 PCDHAC2Q9Y5I4 1007 aa7.24□□□□□ -1.25
CUX1-208ENST00000485792 MYH2Q9UKX2 1941 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 MED23Q9ULK4 1368 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 VEGFAP15692 232 aaPredicted RBP7.23□□□□□ -1.25
CUX1-208ENST00000485792 EPS15P42566 896 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 GRIK5Q16478 980 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 SLC4A10Q6U841 1118 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 ATG9AQ7Z3C6 839 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 GPIHBP1Q8IV16 184 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 CERS5Q8N5B7 392 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 TMEM57Q8N5G2 664 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 SUPT20HQ8NEM7 779 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 RBM46Q8TBY0 533 aaKnown RBP7.23□□□□□ -1.25
CUX1-208ENST00000485792 ZDHHC16Q969W1 377 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 XDHP47989 1333 aa7.23□□□□□ -1.25
CUX1-208ENST00000485792 PNMA6EA0A0J9YXQ4 647 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 PPIP5K2O43314 1243 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 TAF5LO75529 589 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 CCT4P50991 539 aaKnown RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 PTPN12Q05209 780 aaKnown RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 CHRNDQ07001 517 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 MTX1Q13505 466 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 DPP8Q6V1X1 898 aaPredicted RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 ANKRD18AQ8IVF6 992 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 HELBQ8NG08 1087 aaPredicted RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 CLUAP1Q96AJ1 413 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 GMLQ99445 158 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 CDC5LQ99459 802 aaKnown RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 TAF1DQ9H5J8 278 aaPredicted RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 C1orf115Q9H7X2 142 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 PGAP2Q9UHJ9 254 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 ZNRF3Q9ULT6 936 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 PA2G4Q9UQ80 394 aaKnown RBP7.22□□□□□ -1.25
CUX1-208ENST00000485792 RIPOR2Q9Y4F9 1068 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 KIF16BQ96L93 1317 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 PASKQ96RG2 1323 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 FOCADQ5VW36 1801 aa7.22□□□□□ -1.25
CUX1-208ENST00000485792 MYH7P12883 1935 aa7.21□□□□□ -1.25
CUX1-208ENST00000485792 PSMD14O00487 310 aa7.21□□□□□ -1.26
CUX1-208ENST00000485792 ARHGAP33O14559 1287 aa7.21□□□□□ -1.26
CUX1-208ENST00000485792 GPR37O15354 613 aa7.21□□□□□ -1.26
CUX1-208ENST00000485792 MAP3K7O43318 606 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms