RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 SRGAP3O43295 1099 aa19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 RLBP1P12271 317 aa19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 IL15P40933 162 aaPredicted RBP19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 ANGEL2Q5VTE6 544 aaKnown RBP19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 SULF1Q8IWU6 871 aa19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 CEP126Q9P2H0 1117 aa19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 JAG2Q9Y219 1238 aa19.53■□□□□ 0.72
CCDC28B-205ENST00000483009 ADM5C9JUS6 153 aa19.52■□□□□ 0.72
CCDC28B-205ENST00000483009 SLC5A1P13866 664 aa19.52■□□□□ 0.72
CCDC28B-205ENST00000483009 ITPRIPQ8IWB1 547 aa19.52■□□□□ 0.72
CCDC28B-205ENST00000483009 LPIN2Q92539 896 aa19.52■□□□□ 0.72
CCDC28B-205ENST00000483009 ZNF408Q9H9D4 720 aa19.52■□□□□ 0.72
CCDC28B-205ENST00000483009 PITPNM2Q9BZ72 1349 aa19.51■□□□□ 0.71
CCDC28B-205ENST00000483009 WNT10BO00744 389 aa19.51■□□□□ 0.71
CCDC28B-205ENST00000483009 DEFB115Q30KQ5 88 aa19.51■□□□□ 0.71
CCDC28B-205ENST00000483009 NBPF9Q3BBW0 867 aa19.51■□□□□ 0.71
CCDC28B-205ENST00000483009 TLL2Q9Y6L7 1015 aa19.51■□□□□ 0.71
CCDC28B-205ENST00000483009 ZNF646O15015 1829 aaPredicted RBP19.51■□□□□ 0.71
CCDC28B-205ENST00000483009 BCAMP50895 628 aa19.5■□□□□ 0.71
CCDC28B-205ENST00000483009 ATP2B3Q16720 1220 aa19.5■□□□□ 0.71
CCDC28B-205ENST00000483009 MFSD14BQ5SR56 506 aa19.5■□□□□ 0.71
CCDC28B-205ENST00000483009 DLK2Q6UY11 383 aa19.5■□□□□ 0.71
CCDC28B-205ENST00000483009 ZBED3Q96IU2 234 aaPredicted RBP19.5■□□□□ 0.71
CCDC28B-205ENST00000483009 IQSEC3Q9UPP2 1182 aaPredicted RBP19.5■□□□□ 0.71
CCDC28B-205ENST00000483009 F8W031 263 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-205ENST00000483009 FRAT2O75474 233 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-205ENST00000483009 VEGFBP49765 207 aa19.49■□□□□ 0.71
CCDC28B-205ENST00000483009 RCAN3Q9UKA8 241 aa19.49■□□□□ 0.71
CCDC28B-205ENST00000483009 PNMA6EA0A0J9YXQ4 647 aa19.48■□□□□ 0.71
CCDC28B-205ENST00000483009 MS4A1P11836 297 aa19.48■□□□□ 0.71
CCDC28B-205ENST00000483009 CHAF1AQ13111 956 aaPredicted RBP19.48■□□□□ 0.71
CCDC28B-205ENST00000483009 DLGAP5Q15398 846 aa19.48■□□□□ 0.71
CCDC28B-205ENST00000483009 MTMR14Q8NCE2 650 aa19.48■□□□□ 0.71
CCDC28B-205ENST00000483009 PANK1Q8TE04 598 aa19.48■□□□□ 0.71
CCDC28B-205ENST00000483009 ZBTB7BO15156 539 aaPredicted RBP19.47■□□□□ 0.71
CCDC28B-205ENST00000483009 SAPCD2Q86UD0 394 aa19.47■□□□□ 0.71
CCDC28B-205ENST00000483009 TBC1D22AQ8WUA7 517 aa19.47■□□□□ 0.71
CCDC28B-205ENST00000483009 CDCA5Q96FF9 252 aa19.47■□□□□ 0.71
CCDC28B-205ENST00000483009 CFAP100Q494V2 611 aa19.46■□□□□ 0.71
CCDC28B-205ENST00000483009 PAXIP1Q6ZW49 1069 aaPredicted RBP19.46■□□□□ 0.71
CCDC28B-205ENST00000483009 C1orf115Q9H7X2 142 aa19.46■□□□□ 0.71
CCDC28B-205ENST00000483009 GBA2Q9HCG7 927 aaPredicted RBP19.46■□□□□ 0.71
CCDC28B-205ENST00000483009 TRPM7Q96QT4 1865 aa19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 ECE1P42892 770 aa19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 POLA2Q14181 598 aa19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 APOBEC3FQ8IUX4 373 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 HHIPL1Q96JK4 782 aa19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 CAPNS2Q96L46 248 aa19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 TTF2Q9UNY4 1162 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 WDR33Q9C0J8 1336 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-205ENST00000483009 SPDYE2BA6NHP3 402 aa19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 SPDYE6P0CI01 402 aa19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 ATP8B2P98198 1209 aa19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 TFCP2Q12800 502 aa19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 G3BP1Q13283 466 aaKnown RBP eCLIP19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 C2orf69Q8N8R5 385 aa19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 GNL3LQ9NVN8 582 aaKnown RBP19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 SCAF8Q9UPN6 1271 aaKnown RBP19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 PCDHAC2Q9Y5I4 1007 aa19.44■□□□□ 0.7
CCDC28B-205ENST00000483009 HSPA1AP0DMV8 641 aaKnown RBP19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 HSPA1BP0DMV9 641 aaKnown RBP19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 HUNKP57058 714 aa19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 CYP4F22Q6NT55 531 aa19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 SSH3Q8TE77 659 aa19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 SERPINA10Q9UK55 444 aa19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 AKAP2Q9Y2D5 859 aa19.43■□□□□ 0.7
CCDC28B-205ENST00000483009 MYO1BO43795 1136 aa19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 ADORA1P30542 326 aa19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 PHKA1P46020 1223 aa19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 RBM5P52756 815 aaKnown RBP eCLIP19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 GRIK5Q16478 980 aa19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 WDR66Q8TBY9 1149 aa19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 PRMT6Q96LA8 375 aaPredicted RBP19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 SUGT1Q9Y2Z0 365 aa19.42■□□□□ 0.7
CCDC28B-205ENST00000483009 POLR2AP24928 1970 aaKnown RBP19.41■□□□□ 0.7
CCDC28B-205ENST00000483009 A0A1B0GUL7 405 aa19.41■□□□□ 0.7
CCDC28B-205ENST00000483009 TIMM10P62072 90 aa19.41■□□□□ 0.7
CCDC28B-205ENST00000483009 GRM1Q13255 1194 aa19.41■□□□□ 0.7
CCDC28B-205ENST00000483009 MVPQ14764 893 aaKnown RBP19.41■□□□□ 0.7
CCDC28B-205ENST00000483009 CLRN2A0PK11 232 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 SEMA3EO15041 775 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 ZBTB22O15209 634 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 CRKP46108 304 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 FKBP1BP68106 108 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 HDLBPQ00341 1268 aaKnown RBP19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 PRAMEF18Q5VWM3 479 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 CCDC102BQ68D86 513 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 DDX19BQ9UMR2 479 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 AOX1Q06278 1338 aa19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 COL1A1P02452 1464 aaPredicted RBP19.4■□□□□ 0.7
CCDC28B-205ENST00000483009 CEP85Q6P2H3 762 aa19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 XAGE2Q96GT9 111 aa19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 VEZTQ9HBM0 779 aa19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 DENND2AQ9ULE3 1009 aa19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 COG6Q9Y2V7 657 aa19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 MAST3O60307 1309 aa19.39■□□□□ 0.69
CCDC28B-205ENST00000483009 SURF6O75683 361 aaKnown RBP19.38■□□□□ 0.69
CCDC28B-205ENST00000483009 NF2P35240 595 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms