RNA–Protein interactions for RNA: ENST00000482251.2

CPSF4-212, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 574 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-212ENST00000482251 IQSEC3Q9UPP2 1182 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-212ENST00000482251 RIPOR2Q9Y4F9 1068 aa13.15□□□□□ -0.3
CPSF4-212ENST00000482251 MROH5Q6ZUA9 1318 aa13.14□□□□□ -0.31
CPSF4-212ENST00000482251 CT47B1P0C2W7 299 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-212ENST00000482251 ZNF157P51786 506 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-212ENST00000482251 RARSP54136 660 aaKnown RBP13.14□□□□□ -0.31
CPSF4-212ENST00000482251 RGMBQ6NW40 437 aa13.14□□□□□ -0.31
CPSF4-212ENST00000482251 CLRN2A0PK11 232 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 FAM155AB1AL88 458 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-212ENST00000482251 UBTFL1P0CB47 393 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-212ENST00000482251 MAP2K2P36507 400 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 HNRNPUQ00839 825 aaKnown RBP eCLIP13.13□□□□□ -0.31
CPSF4-212ENST00000482251 UBE4AQ14139 1066 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 TTLL12Q14166 644 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-212ENST00000482251 API5Q9BZZ5 524 aaKnown RBP13.13□□□□□ -0.31
CPSF4-212ENST00000482251 PRDM10Q9NQV6 1147 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 ECM29Q5VYK3 1845 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 AOX1Q06278 1338 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
CPSF4-212ENST00000482251 HIBADHP31937 336 aaKnown RBP13.12□□□□□ -0.31
CPSF4-212ENST00000482251 RBM5P52756 815 aaKnown RBP eCLIP13.12□□□□□ -0.31
CPSF4-212ENST00000482251 BRPF1P55201 1214 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-212ENST00000482251 CHAF1AQ13111 956 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-212ENST00000482251 NOGQ13253 232 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 PRKG1Q13976 671 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 DLGAP5Q15398 846 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 CFAP100Q494V2 611 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 MFSD14BQ5SR56 506 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 VPS37DQ86XT2 251 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 VGLL2Q8N8G2 317 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 FAM84BQ96KN1 310 aaPredicted RBP13.12□□□□□ -0.31
CPSF4-212ENST00000482251 MEIS3Q99687 375 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 SIL1Q9H173 461 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 TNNQ9UQP3 1299 aa13.12□□□□□ -0.31
CPSF4-212ENST00000482251 LRRFIP2Q9Y608 721 aaKnown RBP13.12□□□□□ -0.31
CPSF4-212ENST00000482251 SLC10A3P09131 477 aa13.11□□□□□ -0.31
CPSF4-212ENST00000482251 RFX5P48382 616 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-212ENST00000482251 RASAL3Q86YV0 1011 aa13.11□□□□□ -0.31
CPSF4-212ENST00000482251 APOBEC3FQ8IUX4 373 aaKnown RBP13.11□□□□□ -0.31
CPSF4-212ENST00000482251 TDRD7Q8NHU6 1098 aaKnown RBP13.11□□□□□ -0.31
CPSF4-212ENST00000482251 FRAT1Q92837 279 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-212ENST00000482251 ZBED3Q96IU2 234 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-212ENST00000482251 VEZTQ9HBM0 779 aa13.11□□□□□ -0.31
CPSF4-212ENST00000482251 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.11□□□□□ -0.31
CPSF4-212ENST00000482251 FZD1Q9UP38 647 aa13.11□□□□□ -0.31
CPSF4-212ENST00000482251 SPDYE2BA6NHP3 402 aa13.1□□□□□ -0.31
CPSF4-212ENST00000482251 UBE2Q2LH0YL09 131 aa13.1□□□□□ -0.31
CPSF4-212ENST00000482251 FRAT2O75474 233 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-212ENST00000482251 BCAR3O75815 825 aa13.1□□□□□ -0.31
CPSF4-212ENST00000482251 PDE8BO95263 885 aa13.1□□□□□ -0.31
CPSF4-212ENST00000482251 SPDYE6P0CI01 402 aa13.1□□□□□ -0.31
CPSF4-212ENST00000482251 KIF23Q02241 960 aaPredicted RBP13.1□□□□□ -0.31
CPSF4-212ENST00000482251 PTPN12Q05209 780 aaKnown RBP13.1□□□□□ -0.31
CPSF4-212ENST00000482251 MKRN3Q13064 507 aaKnown RBP13.1□□□□□ -0.31
CPSF4-212ENST00000482251 TTF2Q9UNY4 1162 aaKnown RBP13.1□□□□□ -0.31
CPSF4-212ENST00000482251 FAM205AQ6ZU69 1335 aa13.1□□□□□ -0.31
CPSF4-212ENST00000482251 MYH13Q9UKX3 1938 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 SSC5DA1L4H1 1573 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 EYA2O00167 538 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 NF2P35240 595 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 BCAMP50895 628 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 FKBP1AP62942 108 aaKnown RBP13.09□□□□□ -0.31
CPSF4-212ENST00000482251 PUM3Q15397 648 aaKnown RBP13.09□□□□□ -0.31
CPSF4-212ENST00000482251 GRIK5Q16478 980 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 CAVIN4Q5BKX8 364 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 CCDC102AQ96A19 550 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 CLUAP1Q96AJ1 413 aa13.09□□□□□ -0.31
CPSF4-212ENST00000482251 PRMT6Q96LA8 375 aaPredicted RBP13.09□□□□□ -0.31
CPSF4-212ENST00000482251 PA2G4Q9UQ80 394 aaKnown RBP13.09□□□□□ -0.31
CPSF4-212ENST00000482251 MYO1BO43795 1136 aa13.08□□□□□ -0.32
CPSF4-212ENST00000482251 IFIT1P09914 478 aaKnown RBP13.08□□□□□ -0.32
CPSF4-212ENST00000482251 TRIM27P14373 513 aa13.08□□□□□ -0.32
CPSF4-212ENST00000482251 FKBP1BP68106 108 aa13.08□□□□□ -0.32
CPSF4-212ENST00000482251 FBXO33Q7Z6M2 555 aa13.08□□□□□ -0.32
CPSF4-212ENST00000482251 DEFB129Q9H1M3 183 aa13.08□□□□□ -0.32
CPSF4-212ENST00000482251 COL1A1P02452 1464 aaPredicted RBP13.08□□□□□ -0.32
CPSF4-212ENST00000482251 SLC5A1P13866 664 aa13.07□□□□□ -0.32
CPSF4-212ENST00000482251 FGFR2P21802 821 aa13.07□□□□□ -0.32
CPSF4-212ENST00000482251 MMP14P50281 582 aa13.07□□□□□ -0.32
CPSF4-212ENST00000482251 ATG9AQ7Z3C6 839 aa13.07□□□□□ -0.32
CPSF4-212ENST00000482251 MTMR14Q8NCE2 650 aa13.07□□□□□ -0.32
CPSF4-212ENST00000482251 CA12O43570 354 aa13.06□□□□□ -0.32
CPSF4-212ENST00000482251 CRKP46108 304 aa13.06□□□□□ -0.32
CPSF4-212ENST00000482251 INTS3Q68E01 1043 aaKnown RBP13.06□□□□□ -0.32
CPSF4-212ENST00000482251 TDRD3Q9H7E2 651 aaKnown RBP13.06□□□□□ -0.32
CPSF4-212ENST00000482251 ANGEL1Q9UNK9 670 aaKnown RBP13.06□□□□□ -0.32
CPSF4-212ENST00000482251 CASP8AP2Q9UKL3 1982 aa13.06□□□□□ -0.32
CPSF4-212ENST00000482251 AKAP11Q9UKA4 1901 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 TRPA1O75762 1119 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 ATP2B3Q16720 1220 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 ATF7IPQ6VMQ6 1270 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 ARMC9Q7Z3E5 817 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 CDAN1Q8IWY9 1227 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 LPIN2Q92539 896 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 ARHGAP45Q92619 1136 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 CSRNP1Q96S65 589 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 ZNF70Q9UC06 446 aaPredicted RBP13.05□□□□□ -0.32
CPSF4-212ENST00000482251 SERPINA10Q9UK55 444 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 OTOFQ9HC10 1997 aa13.05□□□□□ -0.32
CPSF4-212ENST00000482251 TCP10L2B9ZVM9 353 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms