RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 HNRNPH2P55795 449 aaKnown RBP15.49■□□□□ 0.07
USP42-206ENST00000479544 CEP89Q96ST8 783 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 ZHX3Q9H4I2 956 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 SLC12A7Q9Y666 1083 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 ZNF202O95125 648 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 MYL5Q02045 173 aa15.49■□□□□ 0.07
USP42-206ENST00000479544 EAF2Q96CJ1 260 aaPredicted RBP15.49■□□□□ 0.07
USP42-206ENST00000479544 KCNQ3O43525 872 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 KMT5BQ4FZB7 885 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 TAX1BP1Q86VP1 789 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 DHX58Q96C10 678 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 PRDM4Q9UKN5 801 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 SYNMO15061 1565 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 ETF1P62495 437 aaKnown RBP15.48■□□□□ 0.07
USP42-206ENST00000479544 KSR2Q6VAB6 950 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 C19orf44Q9H6X5 657 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 SSBP05455 408 aaKnown RBP eCLIP15.48■□□□□ 0.07
USP42-206ENST00000479544 TMEM67Q5HYA8 995 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 NAPBQ9H115 298 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 GOLGA6L9A6NEM1 432 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 CCT6AP40227 531 aaKnown RBP15.48■□□□□ 0.07
USP42-206ENST00000479544 TTC31Q49AM3 519 aaPredicted RBP15.48■□□□□ 0.07
USP42-206ENST00000479544 ZSWIM6Q9HCJ5 1215 aa15.48■□□□□ 0.07
USP42-206ENST00000479544 GOLGA6L10A6NI86 522 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 ZEB2O60315 1214 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 ZNF827Q17R98 1081 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 EPS15P42566 896 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 SLC4A8Q2Y0W8 1093 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 ANKRD13DQ6ZTN6 518 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 DDX41Q9UJV9 622 aaKnown RBP15.47■□□□□ 0.07
USP42-206ENST00000479544 MAPK8IP1Q9UQF2 711 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 TBX22Q9Y458 520 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 DPCR1Q3MIW9 517 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 GIMAP7Q8NHV1 300 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 SSH3Q8TE77 659 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 OSBPL3Q9H4L5 887 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 TRPM1Q7Z4N2 1603 aa15.47■□□□□ 0.07
USP42-206ENST00000479544 STAMQ92783 540 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 USP8P40818 1118 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 CLCN6P51797 869 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 MAP9Q49MG5 647 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 LTBP4Q8N2S1 1624 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 CTAGE9A4FU28 777 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 GPTP24298 496 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 CHMP4BP1P59074 171 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 SAMD1Q6SPF0 538 aaPredicted RBP15.46■□□□□ 0.07
USP42-206ENST00000479544 NCOA7Q8NI08 942 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 PLEKHA4Q9H4M7 779 aa15.46■□□□□ 0.07
USP42-206ENST00000479544 PLXNC1O60486 1568 aa15.46■□□□□ 0.06
USP42-206ENST00000479544 TDRD7Q8NHU6 1098 aaKnown RBP15.46■□□□□ 0.06
USP42-206ENST00000479544 IL25Q9H293 177 aa15.46■□□□□ 0.06
USP42-206ENST00000479544 ABCC3O15438 1527 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 SSRP1Q08945 709 aaKnown RBP15.45■□□□□ 0.06
USP42-206ENST00000479544 LINS1Q8NG48 757 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 MYL10Q9BUA6 226 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 TLR7Q9NYK1 1049 aaKnown RBP15.45■□□□□ 0.06
USP42-206ENST00000479544 YEATS4O95619 227 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 STIM1Q13586 685 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 KCNH5Q8NCM2 988 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 LRP2BPQ9P2M1 347 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 NFE2L3Q9Y4A8 694 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 IVLP07476 585 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 SF3A3Q12874 501 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP42-206ENST00000479544 PHKBQ93100 1093 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 SUCLG2Q96I99 432 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 SPTLC3Q9NUV7 552 aa15.45■□□□□ 0.06
USP42-206ENST00000479544 ZNF853P0CG23 659 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 NDUFA8P51970 172 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 PNOCQ13519 176 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 HLTFQ14527 1009 aaKnown RBP eCLIP15.44■□□□□ 0.06
USP42-206ENST00000479544 NACAP1Q9BZK3 213 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 PAG1Q9NWQ8 432 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 KIAA1468Q9P260 1216 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 SPA17Q15506 151 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 TRPM2O94759 1503 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 RANBP6O60518 1105 aaKnown RBP15.44■□□□□ 0.06
USP42-206ENST00000479544 ZNF589Q86UQ0 364 aaPredicted RBP15.44■□□□□ 0.06
USP42-206ENST00000479544 PPP1R13BQ96KQ4 1090 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 STRN4Q9NRL3 753 aa15.44■□□□□ 0.06
USP42-206ENST00000479544 JCADQ9P266 1359 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 MRFAP1L1Q96HT8 127 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 PCDHA7Q9UN72 937 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 RRAGBQ5VZM2 374 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 TICAM2Q86XR7 235 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 ATRIPQ8WXE1 791 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 PSMB7Q99436 277 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 ZKSCAN3Q9BRR0 538 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 IQSEC3Q9UPP2 1182 aaPredicted RBP15.43■□□□□ 0.06
USP42-206ENST00000479544 ZBTB43O43298 467 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 ATP1A3P13637 1013 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 ANO1Q5XXA6 986 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 NGLY1Q96IV0 654 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 TM6SF1Q9BZW5 370 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 VPS16Q9H269 839 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 ARHGAP31Q2M1Z3 1444 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 TDRD12Q587J7 1177 aaKnown RBP15.43■□□□□ 0.06
USP42-206ENST00000479544 IL17REQ8NFR9 667 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 FANCLQ9NW38 375 aa15.43■□□□□ 0.06
USP42-206ENST00000479544 KAT6BQ8WYB5 2073 aa15.42■□□□□ 0.06
USP42-206ENST00000479544 STRCQ7RTU9 1775 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms