RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 KIAA0825Q8IV33 1275 aa27.21■■□□□ 1.95
COL9A3-211ENST00000477612 ARAP2Q8WZ64 1704 aa27.21■■□□□ 1.95
COL9A3-211ENST00000477612 GYG1P46976 350 aa27.2■■□□□ 1.94
COL9A3-211ENST00000477612 CAPNS2Q96L46 248 aa27.2■■□□□ 1.94
COL9A3-211ENST00000477612 ZNF408Q9H9D4 720 aa27.2■■□□□ 1.94
COL9A3-211ENST00000477612 LRRFIP2Q9Y608 721 aaKnown RBP27.2■■□□□ 1.94
COL9A3-211ENST00000477612 GNAI3P08754 354 aa27.19■■□□□ 1.94
COL9A3-211ENST00000477612 FGFR2P21802 821 aa27.19■■□□□ 1.94
COL9A3-211ENST00000477612 ATG9AQ7Z3C6 839 aa27.19■■□□□ 1.94
COL9A3-211ENST00000477612 MTMR14Q8NCE2 650 aa27.19■■□□□ 1.94
COL9A3-211ENST00000477612 CIAO1O76071 339 aa27.18■■□□□ 1.94
COL9A3-211ENST00000477612 CYP4F22Q6NT55 531 aa27.18■■□□□ 1.94
COL9A3-211ENST00000477612 FRAT1Q92837 279 aaPredicted RBP27.18■■□□□ 1.94
COL9A3-211ENST00000477612 CDCA5Q96FF9 252 aa27.17■■□□□ 1.94
COL9A3-211ENST00000477612 GBA2Q9HCG7 927 aaPredicted RBP27.17■■□□□ 1.94
COL9A3-211ENST00000477612 WBP1LQ9NX94 342 aa27.17■■□□□ 1.94
COL9A3-211ENST00000477612 TNNQ9UQP3 1299 aa27.17■■□□□ 1.94
COL9A3-211ENST00000477612 MTX1Q13505 466 aa27.16■■□□□ 1.94
COL9A3-211ENST00000477612 ZKSCAN2Q63HK3 967 aa27.16■■□□□ 1.94
COL9A3-211ENST00000477612 COPRSQ9NQ92 184 aa27.16■■□□□ 1.94
COL9A3-211ENST00000477612 PUM3Q15397 648 aaKnown RBP27.15■■□□□ 1.94
COL9A3-211ENST00000477612 CAVIN4Q5BKX8 364 aa27.15■■□□□ 1.94
COL9A3-211ENST00000477612 C2orf69Q8N8R5 385 aa27.15■■□□□ 1.94
COL9A3-211ENST00000477612 MYH13Q9UKX3 1938 aa27.15■■□□□ 1.94
COL9A3-211ENST00000477612 MAP2K2P36507 400 aa27.14■■□□□ 1.94
COL9A3-211ENST00000477612 MAP2K1Q02750 393 aaPredicted RBP27.14■■□□□ 1.94
COL9A3-211ENST00000477612 IFIT1P09914 478 aaKnown RBP27.13■■□□□ 1.93
COL9A3-211ENST00000477612 HUNKP57058 714 aa27.13■■□□□ 1.93
COL9A3-211ENST00000477612 DLGAP5Q15398 846 aa27.12■■□□□ 1.93
COL9A3-211ENST00000477612 PAXIP1Q6ZW49 1069 aaPredicted RBP27.12■■□□□ 1.93
COL9A3-211ENST00000477612 VPS37DQ86XT2 251 aa27.12■■□□□ 1.93
COL9A3-211ENST00000477612 LPIN2Q92539 896 aa27.12■■□□□ 1.93
COL9A3-211ENST00000477612 CLUAP1Q96AJ1 413 aa27.12■■□□□ 1.93
COL9A3-211ENST00000477612 JAG2Q9Y219 1238 aa27.12■■□□□ 1.93
COL9A3-211ENST00000477612 PAPPA2Q9BXP8 1791 aa27.12■■□□□ 1.93
COL9A3-211ENST00000477612 IL15P40933 162 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-211ENST00000477612 FKBP1BP68106 108 aa27.11■■□□□ 1.93
COL9A3-211ENST00000477612 MFSD14BQ5SR56 506 aa27.11■■□□□ 1.93
COL9A3-211ENST00000477612 FOXN1O15353 648 aa27.1■■□□□ 1.93
COL9A3-211ENST00000477612 BCAMP50895 628 aa27.1■■□□□ 1.93
COL9A3-211ENST00000477612 APOBEC3FQ8IUX4 373 aaKnown RBP27.1■■□□□ 1.93
COL9A3-211ENST00000477612 TMEM57Q8N5G2 664 aa27.1■■□□□ 1.93
COL9A3-211ENST00000477612 COL1A1P02452 1464 aaPredicted RBP27.09■■□□□ 1.93
COL9A3-211ENST00000477612 F8W031 263 aaPredicted RBP27.09■■□□□ 1.93
COL9A3-211ENST00000477612 SLC5A1P13866 664 aa27.09■■□□□ 1.93
COL9A3-211ENST00000477612 CFAP100Q494V2 611 aa27.09■■□□□ 1.93
COL9A3-211ENST00000477612 RGMBQ6NW40 437 aa27.09■■□□□ 1.93
COL9A3-211ENST00000477612 SIL1Q9H173 461 aa27.09■■□□□ 1.93
COL9A3-211ENST00000477612 CEP126Q9P2H0 1117 aa27.09■■□□□ 1.93
COL9A3-211ENST00000477612 SCAF8Q9UPN6 1271 aaKnown RBP27.09■■□□□ 1.93
COL9A3-211ENST00000477612 PA2G4Q9UQ80 394 aaKnown RBP27.09■■□□□ 1.93
COL9A3-211ENST00000477612 SPDYE2BA6NHP3 402 aa27.08■■□□□ 1.93
COL9A3-211ENST00000477612 ZBTB22O15209 634 aa27.08■■□□□ 1.93
COL9A3-211ENST00000477612 GNAI2P04899 355 aa27.08■■□□□ 1.93
COL9A3-211ENST00000477612 SPDYE6P0CI01 402 aa27.08■■□□□ 1.93
COL9A3-211ENST00000477612 COL13A1Q5TAT6 717 aaPredicted RBP27.08■■□□□ 1.93
COL9A3-211ENST00000477612 TBC1D22AQ8WUA7 517 aa27.08■■□□□ 1.93
COL9A3-211ENST00000477612 PRMT6Q96LA8 375 aaPredicted RBP27.08■■□□□ 1.93
COL9A3-211ENST00000477612 SERPINA10Q9UK55 444 aa27.08■■□□□ 1.93
COL9A3-211ENST00000477612 SRGAP3O43295 1099 aa27.07■■□□□ 1.92
COL9A3-211ENST00000477612 AOC2O75106 756 aa27.07■■□□□ 1.92
COL9A3-211ENST00000477612 AIDAQ96BJ3 306 aa27.07■■□□□ 1.92
COL9A3-211ENST00000477612 PCDHAC2Q9Y5I4 1007 aa27.07■■□□□ 1.92
COL9A3-211ENST00000477612 FAM155AB1AL88 458 aaPredicted RBP27.06■■□□□ 1.92
COL9A3-211ENST00000477612 GRM1Q13255 1194 aa27.06■■□□□ 1.92
COL9A3-211ENST00000477612 CCDC102AQ96A19 550 aa27.06■■□□□ 1.92
COL9A3-211ENST00000477612 TTF2Q9UNY4 1162 aaKnown RBP27.06■■□□□ 1.92
COL9A3-211ENST00000477612 IQSEC3Q9UPP2 1182 aaPredicted RBP27.06■■□□□ 1.92
COL9A3-211ENST00000477612 CTCFP49711 727 aaPredicted RBP27.05■■□□□ 1.92
COL9A3-211ENST00000477612 HDLBPQ00341 1268 aaKnown RBP27.05■■□□□ 1.92
COL9A3-211ENST00000477612 NOGQ13253 232 aa27.05■■□□□ 1.92
COL9A3-211ENST00000477612 MRIQ9BWK5 157 aa27.05■■□□□ 1.92
COL9A3-211ENST00000477612 MYO1BO43795 1136 aa27.04■■□□□ 1.92
COL9A3-211ENST00000477612 FRAT2O75474 233 aaPredicted RBP27.04■■□□□ 1.92
COL9A3-211ENST00000477612 ATP2B3Q16720 1220 aa27.04■■□□□ 1.92
COL9A3-211ENST00000477612 PRAMEF18Q5VWM3 479 aa27.04■■□□□ 1.92
COL9A3-211ENST00000477612 DZIP1LQ8IYY4 767 aaKnown RBP27.04■■□□□ 1.92
COL9A3-211ENST00000477612 PRDM10Q9NQV6 1147 aa27.04■■□□□ 1.92
COL9A3-211ENST00000477612 SUGT1Q9Y2Z0 365 aa27.04■■□□□ 1.92
COL9A3-211ENST00000477612 GRIK5Q16478 980 aa27.03■■□□□ 1.92
COL9A3-211ENST00000477612 IFFO2Q5TF58 517 aa27.03■■□□□ 1.92
COL9A3-211ENST00000477612 DEFB129Q9H1M3 183 aa27.03■■□□□ 1.92
COL9A3-211ENST00000477612 PPP2R3BQ9Y5P8 575 aa27.03■■□□□ 1.92
COL9A3-211ENST00000477612 CHAF1AQ13111 956 aaPredicted RBP27.02■■□□□ 1.92
COL9A3-211ENST00000477612 AOX1Q06278 1338 aa27.01■■□□□ 1.91
COL9A3-211ENST00000477612 PNMA6EA0A0J9YXQ4 647 aa27.01■■□□□ 1.91
COL9A3-211ENST00000477612 RLBP1P12271 317 aa27.01■■□□□ 1.91
COL9A3-211ENST00000477612 NF2P35240 595 aa27.01■■□□□ 1.91
COL9A3-211ENST00000477612 ZNF157P51786 506 aaPredicted RBP27.01■■□□□ 1.91
COL9A3-211ENST00000477612 ZBTB7BO15156 539 aaPredicted RBP27■■□□□ 1.91
COL9A3-211ENST00000477612 SLC10A3P09131 477 aa27■■□□□ 1.91
COL9A3-211ENST00000477612 CRKP46108 304 aa27■■□□□ 1.91
COL9A3-211ENST00000477612 RBM5P52756 815 aaKnown RBP eCLIP27■■□□□ 1.91
COL9A3-211ENST00000477612 SPDYE2Q495Y8 402 aa27■■□□□ 1.91
COL9A3-211ENST00000477612 FTSJ3Q8IY81 847 aaKnown RBP27■■□□□ 1.91
COL9A3-211ENST00000477612 WDR66Q8TBY9 1149 aa27■■□□□ 1.91
COL9A3-211ENST00000477612 ZIC5Q96T25 663 aa27■■□□□ 1.91
COL9A3-211ENST00000477612 AKAP11Q9UKA4 1901 aa27■■□□□ 1.91
COL9A3-211ENST00000477612 HSPA8P11142 646 aaKnown RBP26.99■■□□□ 1.91
COL9A3-211ENST00000477612 BEGAINQ9BUH8 593 aa26.99■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms