RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 CCDC102BQ68D86 513 aa20.89■□□□□ 0.93
SCAF11-206ENST00000474828 USP50Q70EL3 339 aaPredicted RBP20.89■□□□□ 0.93
SCAF11-206ENST00000474828 PNMA8AQ86V59 439 aaPredicted RBP20.89■□□□□ 0.93
SCAF11-206ENST00000474828 EXOC6Q8TAG9 804 aa20.89■□□□□ 0.93
SCAF11-206ENST00000474828 RBM46Q8TBY0 533 aaKnown RBP20.89■□□□□ 0.93
SCAF11-206ENST00000474828 RHPN1Q8TCX5 695 aa20.89■□□□□ 0.93
SCAF11-206ENST00000474828 KIF1BPQ96EK5 621 aa20.89■□□□□ 0.93
SCAF11-206ENST00000474828 ZNF512BQ96KM6 892 aaPredicted RBP20.89■□□□□ 0.93
SCAF11-206ENST00000474828 PGAP2Q9UHJ9 254 aa20.89■□□□□ 0.93
SCAF11-206ENST00000474828 COL1A1P02452 1464 aaPredicted RBP20.88■□□□□ 0.93
SCAF11-206ENST00000474828 CEP350Q5VT06 3117 aa20.88■□□□□ 0.93
SCAF11-206ENST00000474828 LMOD1P29536 600 aaPredicted RBP20.88■□□□□ 0.93
SCAF11-206ENST00000474828 PHKA1P46020 1223 aa20.88■□□□□ 0.93
SCAF11-206ENST00000474828 EAF2Q96CJ1 260 aaPredicted RBP20.88■□□□□ 0.93
SCAF11-206ENST00000474828 OS9Q13438 667 aaPredicted RBP20.87■□□□□ 0.93
SCAF11-206ENST00000474828 VPS37DQ86XT2 251 aa20.87■□□□□ 0.93
SCAF11-206ENST00000474828 MICALL2Q8IY33 904 aa20.87■□□□□ 0.93
SCAF11-206ENST00000474828 SALL1Q9NSC2 1324 aa20.86■□□□□ 0.93
SCAF11-206ENST00000474828 USP17L8P0C7I0 530 aa20.86■□□□□ 0.93
SCAF11-206ENST00000474828 ARID4AP29374 1257 aaPredicted RBP20.86■□□□□ 0.93
SCAF11-206ENST00000474828 TBC1D22AQ8WUA7 517 aa20.86■□□□□ 0.93
SCAF11-206ENST00000474828 MXD3Q9BW11 206 aa20.86■□□□□ 0.93
SCAF11-206ENST00000474828 GNL3LQ9NVN8 582 aaKnown RBP20.86■□□□□ 0.93
SCAF11-206ENST00000474828 DBNLQ9UJU6 430 aaKnown RBP20.86■□□□□ 0.93
SCAF11-206ENST00000474828 SUGT1Q9Y2Z0 365 aa20.86■□□□□ 0.93
SCAF11-206ENST00000474828 SHTN1A0MZ66 631 aa20.85■□□□□ 0.93
SCAF11-206ENST00000474828 H7C1D1 291 aa20.85■□□□□ 0.93
SCAF11-206ENST00000474828 HIRAP54198 1017 aaPredicted RBP20.85■□□□□ 0.93
SCAF11-206ENST00000474828 LDHDQ86WU2 507 aa20.85■□□□□ 0.93
SCAF11-206ENST00000474828 ZC3H15Q8WU90 426 aaKnown RBP20.85■□□□□ 0.93
SCAF11-206ENST00000474828 ZBED3Q96IU2 234 aaPredicted RBP20.85■□□□□ 0.93
SCAF11-206ENST00000474828 MTMR14Q8NCE2 650 aa20.84■□□□□ 0.93
SCAF11-206ENST00000474828 WDR66Q8TBY9 1149 aa20.84■□□□□ 0.93
SCAF11-206ENST00000474828 NEUROD6Q96NK8 337 aa20.84■□□□□ 0.93
SCAF11-206ENST00000474828 DBNDD2Q9BQY9 259 aa20.84■□□□□ 0.93
SCAF11-206ENST00000474828 MRIQ9BWK5 157 aa20.84■□□□□ 0.93
SCAF11-206ENST00000474828 DENND2AQ9ULE3 1009 aa20.84■□□□□ 0.93
SCAF11-206ENST00000474828 POTEIP0CG38 1075 aa20.83■□□□□ 0.93
SCAF11-206ENST00000474828 POTEJP0CG39 1038 aa20.83■□□□□ 0.93
SCAF11-206ENST00000474828 FSTL1Q12841 308 aa20.83■□□□□ 0.93
SCAF11-206ENST00000474828 RASGRF1Q13972 1273 aa20.83■□□□□ 0.93
SCAF11-206ENST00000474828 MFSD14BQ5SR56 506 aa20.83■□□□□ 0.93
SCAF11-206ENST00000474828 TRPM4Q8TD43 1214 aa20.83■□□□□ 0.93
SCAF11-206ENST00000474828 EGFRP00533 1210 aa20.82■□□□□ 0.92
SCAF11-206ENST00000474828 UQCRFS1P1P0C7P4 283 aa20.82■□□□□ 0.92
SCAF11-206ENST00000474828 HDLBPQ00341 1268 aaKnown RBP20.82■□□□□ 0.92
SCAF11-206ENST00000474828 CLASRPQ8N2M8 674 aaKnown RBP20.82■□□□□ 0.92
SCAF11-206ENST00000474828 LRRCC1Q9C099 1032 aa20.82■□□□□ 0.92
SCAF11-206ENST00000474828 TLR7Q9NYK1 1049 aaKnown RBP20.82■□□□□ 0.92
SCAF11-206ENST00000474828 IQSEC3Q9UPP2 1182 aaPredicted RBP20.82■□□□□ 0.92
SCAF11-206ENST00000474828 SAMD7Q7Z3H4 446 aa20.81■□□□□ 0.92
SCAF11-206ENST00000474828 MYOZ2Q9NPC6 264 aa20.81■□□□□ 0.92
SCAF11-206ENST00000474828 HMG20BQ9P0W2 317 aa20.81■□□□□ 0.92
SCAF11-206ENST00000474828 IGSF3O75054 1194 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 CHADLQ6NUI6 762 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 KIAA0825Q8IV33 1275 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 SMC5Q8IY18 1101 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 C16orf71Q8IYS4 520 aaPredicted RBP20.8■□□□□ 0.92
SCAF11-206ENST00000474828 OGFOD1Q8N543 542 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 SMC1BQ8NDV3 1235 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 GCC1Q96CN9 775 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 IL1RAPL2Q9NP60 686 aa20.8■□□□□ 0.92
SCAF11-206ENST00000474828 FRAT2O75474 233 aaPredicted RBP20.79■□□□□ 0.92
SCAF11-206ENST00000474828 MCAMP43121 646 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 APLP1P51693 650 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 SCARF1Q14162 830 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 GRIK5Q16478 980 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 CCDC158Q5M9N0 1113 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 AACSQ86V21 672 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.79■□□□□ 0.92
SCAF11-206ENST00000474828 CCDC8Q9H0W5 538 aaPredicted RBP20.79■□□□□ 0.92
SCAF11-206ENST00000474828 SERPINA10Q9UK55 444 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 JAG2Q9Y219 1238 aa20.79■□□□□ 0.92
SCAF11-206ENST00000474828 AKAP11Q9UKA4 1901 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 MYH13Q9UKX3 1938 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 ITGBL1O95965 494 aaPredicted RBP20.78■□□□□ 0.92
SCAF11-206ENST00000474828 KIF4BQ2VIQ3 1234 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 GORABQ5T7V8 394 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 SPATA5Q8NB90 893 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 FBXW7Q969H0 707 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 HDAC9Q9UKV0 1011 aa20.78■□□□□ 0.92
SCAF11-206ENST00000474828 CHAF1AQ13111 956 aaPredicted RBP20.77■□□□□ 0.92
SCAF11-206ENST00000474828 TBC1D10BQ4KMP7 808 aaPredicted RBP20.77■□□□□ 0.92
SCAF11-206ENST00000474828 ZGPATQ8N5A5 531 aaKnown RBP20.77■□□□□ 0.92
SCAF11-206ENST00000474828 PITPNM2Q9BZ72 1349 aa20.77■□□□□ 0.91
SCAF11-206ENST00000474828 WNT10BO00744 389 aa20.76■□□□□ 0.91
SCAF11-206ENST00000474828 EAPPQ56P03 285 aaPredicted RBP20.76■□□□□ 0.91
SCAF11-206ENST00000474828 RWDD1Q9H446 243 aaPredicted RBP20.76■□□□□ 0.91
SCAF11-206ENST00000474828 PASKQ96RG2 1323 aa20.76■□□□□ 0.91
SCAF11-206ENST00000474828 SPDYE2BA6NHP3 402 aa20.75■□□□□ 0.91
SCAF11-206ENST00000474828 IGHDP01880 384 aa20.75■□□□□ 0.91
SCAF11-206ENST00000474828 SPDYE6P0CI01 402 aa20.75■□□□□ 0.91
SCAF11-206ENST00000474828 HHIPL2Q6UWX4 724 aa20.75■□□□□ 0.91
SCAF11-206ENST00000474828 TTF2Q9UNY4 1162 aaKnown RBP20.75■□□□□ 0.91
SCAF11-206ENST00000474828 MAST3O60307 1309 aa20.75■□□□□ 0.91
SCAF11-206ENST00000474828 IFIT2P09913 472 aaKnown RBP20.74■□□□□ 0.91
SCAF11-206ENST00000474828 PRDX5P30044 214 aa20.74■□□□□ 0.91
SCAF11-206ENST00000474828 IRX6P78412 446 aaPredicted RBP20.74■□□□□ 0.91
SCAF11-206ENST00000474828 TTC39AQ5SRH9 613 aa20.74■□□□□ 0.91
SCAF11-206ENST00000474828 IFFO2Q5TF58 517 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms