RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 ZNF646O15015 1829 aaPredicted RBP8.68□□□□□ -1.02
LIMD1-204ENST00000474665 UFL1O94874 794 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 KIAA2012Q0VF49 1180 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 AOC3Q16853 763 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 GRIPAP1Q4V328 841 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 TAF7LQ5H9L4 462 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 FBXO46Q6PJ61 603 aaPredicted RBP8.68□□□□□ -1.02
LIMD1-204ENST00000474665 COL25A1Q9BXS0 654 aaPredicted RBP8.68□□□□□ -1.02
LIMD1-204ENST00000474665 GGA1Q9UJY5 639 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 FBXO3Q9UK99 471 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 EXOC6BQ9Y2D4 811 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 TRIOBPQ9H2D6 2365 aa8.68□□□□□ -1.02
LIMD1-204ENST00000474665 ZNF804BA4D1E1 1349 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 YDJCA8MPS7 323 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 H0YGN5 161 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 C6orf229H3BNL8 230 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 SURF6O75683 361 aaKnown RBP8.67□□□□□ -1.02
LIMD1-204ENST00000474665 PDE8BO95263 885 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 TBC1D8O95759 1140 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 CENPBP07199 599 aaPredicted RBP8.67□□□□□ -1.02
LIMD1-204ENST00000474665 ATP2B4P23634 1241 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 IL15P40933 162 aaPredicted RBP8.67□□□□□ -1.02
LIMD1-204ENST00000474665 ZNF157P51786 506 aaPredicted RBP8.67□□□□□ -1.02
LIMD1-204ENST00000474665 TFCP2Q12800 502 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 METTL24Q5JXM2 366 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 CHRDL2Q6WN34 429 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 MROH5Q6ZUA9 1318 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 C15orf52Q6ZUT6 534 aaKnown RBP8.67□□□□□ -1.02
LIMD1-204ENST00000474665 CCDC102AQ96A19 550 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 ANKRD2Q9GZV1 360 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 CHMP4BQ9H444 224 aaKnown RBP8.67□□□□□ -1.02
LIMD1-204ENST00000474665 DCTPP1Q9H773 170 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 KCNQ5Q9NR82 932 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 LEMD3Q9Y2U8 911 aa8.67□□□□□ -1.02
LIMD1-204ENST00000474665 PSME4Q14997 1843 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 MED23Q9ULK4 1368 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 RIMBP2O15034 1052 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 PPIP5K2O43314 1243 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 IGHDP01880 384 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 EN2P19622 333 aaPredicted RBP8.66□□□□□ -1.02
LIMD1-204ENST00000474665 ADORA1P30542 326 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 HIRAP54198 1017 aaPredicted RBP8.66□□□□□ -1.02
LIMD1-204ENST00000474665 UBE4AQ14139 1066 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 DOK7Q18PE1 504 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 USP48Q86UV5 1035 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 FAM84BQ96KN1 310 aaPredicted RBP8.66□□□□□ -1.02
LIMD1-204ENST00000474665 ADARB2Q9NS39 739 aaKnown RBP8.66□□□□□ -1.02
LIMD1-204ENST00000474665 CEP126Q9P2H0 1117 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 PGAP2Q9UHJ9 254 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 AKAP11Q9UKA4 1901 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 ARAP2Q8WZ64 1704 aa8.66□□□□□ -1.02
LIMD1-204ENST00000474665 MKI67P46013 3256 aaKnown RBP8.65□□□□□ -1.02
LIMD1-204ENST00000474665 GYG1P46976 350 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 TIMM10P62072 90 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 G3BP1Q13283 466 aaKnown RBP eCLIP8.65□□□□□ -1.02
LIMD1-204ENST00000474665 HDAC1Q13547 482 aaPredicted RBP8.65□□□□□ -1.02
LIMD1-204ENST00000474665 AAMPQ13685 434 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 PUM3Q15397 648 aaKnown RBP8.65□□□□□ -1.02
LIMD1-204ENST00000474665 WASHC4Q2M389 1173 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 CDC37L1Q7L3B6 337 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 FBXO33Q7Z6M2 555 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 LARGE2Q8N3Y3 721 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 EAF2Q96CJ1 260 aaPredicted RBP8.65□□□□□ -1.02
LIMD1-204ENST00000474665 VPS33BQ9H267 617 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 DBNDD1Q9H9R9 158 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 GPRC5DQ9NZD1 345 aa8.65□□□□□ -1.02
LIMD1-204ENST00000474665 RBM27Q9P2N5 1060 aaKnown RBP8.65□□□□□ -1.02
LIMD1-204ENST00000474665 ZNF609O15014 1411 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 HMMRO75330 724 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 BCAMP50895 628 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 CXCL9Q07325 125 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 ATP2B3Q16720 1220 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 SUPT20HQ8NEM7 779 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 RHPN1Q8TCX5 695 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 LPIN2Q92539 896 aa8.64□□□□□ -1.03
LIMD1-204ENST00000474665 ZC3H12CQ9C0D7 883 aaKnown RBP8.64□□□□□ -1.03
LIMD1-204ENST00000474665 TMX4Q9H1E5 349 aaPredicted RBP8.64□□□□□ -1.03
LIMD1-204ENST00000474665 GBA2Q9HCG7 927 aaPredicted RBP8.64□□□□□ -1.03
LIMD1-204ENST00000474665 TLR7Q9NYK1 1049 aaKnown RBP8.64□□□□□ -1.03
LIMD1-204ENST00000474665 MYO5AQ9Y4I1 1855 aaKnown RBP8.64□□□□□ -1.03
LIMD1-204ENST00000474665 COL1A1P02452 1464 aaPredicted RBP8.64□□□□□ -1.03
LIMD1-204ENST00000474665 A0A1B0GUL7 405 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 APBB1O00213 710 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 SMARCA5O60264 1052 aaPredicted RBP8.63□□□□□ -1.03
LIMD1-204ENST00000474665 ECE2O60344 883 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 SLC10A3P09131 477 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 IL1R1P14778 569 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 KCNJ4P48050 445 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 TNNI3KQ59H18 835 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 SMC5Q8IY18 1101 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 C2orf69Q8N8R5 385 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 TDRD7Q8NHU6 1098 aaKnown RBP8.63□□□□□ -1.03
LIMD1-204ENST00000474665 EYA3Q99504 573 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 CD209Q9NNX6 404 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 IL1RAPL2Q9NP60 686 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 GPR108Q9NPR9 543 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 DBNLQ9UJU6 430 aaKnown RBP8.63□□□□□ -1.03
LIMD1-204ENST00000474665 ZNRF3Q9ULT6 936 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 FPGT-TNNI3KV9GXZ4 949 aa8.63□□□□□ -1.03
LIMD1-204ENST00000474665 COL6A3P12111 3177 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms