RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	NBPF7	P0C2Y1	421 aa	Predicted RBP	18.96	■□□□□ 0.63
VARS-223	ENST00000474643	PRAMEF18	Q5VWM3	479 aa		18.96	■□□□□ 0.63
VARS-223	ENST00000474643	C15orf52	Q6ZUT6	534 aa	Known RBP	18.96	■□□□□ 0.63
VARS-223	ENST00000474643	METTL24	Q5JXM2	366 aa		18.95	■□□□□ 0.62
VARS-223	ENST00000474643	ARMC9	Q7Z3E5	817 aa		18.95	■□□□□ 0.62
VARS-223	ENST00000474643	ZIC5	Q96T25	663 aa		18.95	■□□□□ 0.62
VARS-223	ENST00000474643	MROH5	Q6ZUA9	1318 aa		18.95	■□□□□ 0.62
VARS-223	ENST00000474643	FAM155A	B1AL88	458 aa	Predicted RBP	18.94	■□□□□ 0.62
VARS-223	ENST00000474643	IL1R1	P14778	569 aa		18.94	■□□□□ 0.62
VARS-223	ENST00000474643	RARS	P54136	660 aa	Known RBP	18.94	■□□□□ 0.62
VARS-223	ENST00000474643	PRKG1	Q13976	671 aa		18.94	■□□□□ 0.62
VARS-223	ENST00000474643	UBE4A	Q14139	1066 aa		18.94	■□□□□ 0.62
VARS-223	ENST00000474643	RASAL3	Q86YV0	1011 aa		18.94	■□□□□ 0.62
VARS-223	ENST00000474643	REM2	Q8IYK8	340 aa	Predicted RBP	18.94	■□□□□ 0.62
VARS-223	ENST00000474643	ABHD8	Q96I13	439 aa		18.94	■□□□□ 0.62
VARS-223	ENST00000474643	VEZT	Q9HBM0	779 aa		18.94	■□□□□ 0.62
VARS-223	ENST00000474643	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	18.94	■□□□□ 0.62
VARS-223	ENST00000474643	UBE2Q2L	H0YL09	131 aa		18.93	■□□□□ 0.62
VARS-223	ENST00000474643	TRPA1	O75762	1119 aa		18.93	■□□□□ 0.62
VARS-223	ENST00000474643	HIBADH	P31937	336 aa	Known RBP	18.93	■□□□□ 0.62
VARS-223	ENST00000474643	CAVIN4	Q5BKX8	364 aa		18.93	■□□□□ 0.62
VARS-223	ENST00000474643	SAGE1	Q9NXZ1	904 aa		18.93	■□□□□ 0.62
VARS-223	ENST00000474643	NOB1	Q9ULX3	412 aa	Known RBP	18.93	■□□□□ 0.62
VARS-223	ENST00000474643	CFAP100	Q494V2	611 aa		18.92	■□□□□ 0.62
VARS-223	ENST00000474643	MOB2	Q70IA6	237 aa		18.92	■□□□□ 0.62
VARS-223	ENST00000474643	UTY	O14607	1347 aa		18.92	■□□□□ 0.62
VARS-223	ENST00000474643		A0A1B0GUL6	1792 aa		18.91	■□□□□ 0.62
VARS-223	ENST00000474643	CLRN2	A0PK11	232 aa		18.91	■□□□□ 0.62
VARS-223	ENST00000474643	CCDC85C	A6NKD9	419 aa		18.91	■□□□□ 0.62
VARS-223	ENST00000474643	GYG1	P46976	350 aa		18.91	■□□□□ 0.62
VARS-223	ENST00000474643	FKBP1A	P62942	108 aa	Known RBP	18.91	■□□□□ 0.62
VARS-223	ENST00000474643	MFSD14B	Q5SR56	506 aa		18.91	■□□□□ 0.62
VARS-223	ENST00000474643	PUS3	Q9BZE2	481 aa	Known RBP	18.91	■□□□□ 0.62
VARS-223	ENST00000474643	API5	Q9BZZ5	524 aa	Known RBP	18.91	■□□□□ 0.62
VARS-223	ENST00000474643	KIF16B	Q96L93	1317 aa		18.91	■□□□□ 0.62
VARS-223	ENST00000474643	COL1A1	P02452	1464 aa	Predicted RBP	18.9	■□□□□ 0.62
VARS-223	ENST00000474643	DGKZ	Q13574	1117 aa		18.9	■□□□□ 0.62
VARS-223	ENST00000474643	CERS5	Q8N5B7	392 aa		18.9	■□□□□ 0.62
VARS-223	ENST00000474643	FRAT1	Q92837	279 aa	Predicted RBP	18.9	■□□□□ 0.62
VARS-223	ENST00000474643	DEFB129	Q9H1M3	183 aa		18.9	■□□□□ 0.62
VARS-223	ENST00000474643	TTF2	Q9UNY4	1162 aa	Known RBP	18.9	■□□□□ 0.62
VARS-223	ENST00000474643	ZNF646	O15015	1829 aa	Predicted RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	SPDYE2B	A6NHP3	402 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	PPP1R12B	O60237	982 aa	Predicted RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	UBTFL1	P0CB47	393 aa	Predicted RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	SPDYE6	P0CI01	402 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	MKRN3	Q13064	507 aa	Known RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	CHAF1A	Q13111	956 aa	Predicted RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	RABL6	Q3YEC7	729 aa	Predicted RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	KAZALD1	Q96I82	304 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	CSRNP1	Q96S65	589 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	RNF186	Q9NXI6	227 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	ANGEL1	Q9UNK9	670 aa	Known RBP	18.89	■□□□□ 0.61
VARS-223	ENST00000474643	PPP2R3B	Q9Y5P8	575 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	IRS2	Q9Y4H2	1338 aa		18.89	■□□□□ 0.61
VARS-223	ENST00000474643	IPO8	O15397	1037 aa	Known RBP	18.88	■□□□□ 0.61
VARS-223	ENST00000474643	IFIT1	P09914	478 aa	Known RBP	18.88	■□□□□ 0.61
VARS-223	ENST00000474643	TNFAIP1	Q13829	316 aa		18.88	■□□□□ 0.61
VARS-223	ENST00000474643	SUPT20HL1	Q3ZLR7	823 aa		18.88	■□□□□ 0.61
VARS-223	ENST00000474643	LRRC24	Q50LG9	513 aa		18.88	■□□□□ 0.61
VARS-223	ENST00000474643	MTMR14	Q8NCE2	650 aa		18.88	■□□□□ 0.61
VARS-223	ENST00000474643	YTHDC1	Q96MU7	727 aa	Known RBP	18.88	■□□□□ 0.61
VARS-223	ENST00000474643	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	18.88	■□□□□ 0.61
VARS-223	ENST00000474643	HDAC5	Q9UQL6	1122 aa		18.88	■□□□□ 0.61
VARS-223	ENST00000474643	RIPOR2	Q9Y4F9	1068 aa		18.88	■□□□□ 0.61
VARS-223	ENST00000474643	BCAR3	O75815	825 aa		18.87	■□□□□ 0.61
VARS-223	ENST00000474643	SREBF2	Q12772	1141 aa		18.87	■□□□□ 0.61
VARS-223	ENST00000474643	FAM205A	Q6ZU69	1335 aa		18.87	■□□□□ 0.61
VARS-223	ENST00000474643	ANKRD44	Q8N8A2	993 aa		18.87	■□□□□ 0.61
VARS-223	ENST00000474643	FAM84B	Q96KN1	310 aa	Predicted RBP	18.87	■□□□□ 0.61
VARS-223	ENST00000474643	MCOLN1	Q9GZU1	580 aa		18.87	■□□□□ 0.61
VARS-223	ENST00000474643	AKAP11	Q9UKA4	1901 aa		18.87	■□□□□ 0.61
VARS-223	ENST00000474643	PDE8B	O95263	885 aa		18.86	■□□□□ 0.61
VARS-223	ENST00000474643	PUM3	Q15397	648 aa	Known RBP	18.86	■□□□□ 0.61
VARS-223	ENST00000474643	TDRD7	Q8NHU6	1098 aa	Known RBP	18.86	■□□□□ 0.61
VARS-223	ENST00000474643	KLHDC4	Q8TBB5	520 aa		18.86	■□□□□ 0.61
VARS-223	ENST00000474643	TBC1D22A	Q8WUA7	517 aa		18.86	■□□□□ 0.61
VARS-223	ENST00000474643	USP44	Q9H0E7	712 aa		18.86	■□□□□ 0.61
VARS-223	ENST00000474643	CASP8AP2	Q9UKL3	1982 aa		18.85	■□□□□ 0.61
VARS-223	ENST00000474643	SLC5A1	P13866	664 aa		18.85	■□□□□ 0.61
VARS-223	ENST00000474643	SLC10A4	Q96EP9	437 aa		18.85	■□□□□ 0.61
VARS-223	ENST00000474643	ZBED3	Q96IU2	234 aa	Predicted RBP	18.85	■□□□□ 0.61
VARS-223	ENST00000474643	PRMT6	Q96LA8	375 aa	Predicted RBP	18.85	■□□□□ 0.61
VARS-223	ENST00000474643	SERPINA10	Q9UK55	444 aa		18.85	■□□□□ 0.61
VARS-223	ENST00000474643	PCDHAC2	Q9Y5I4	1007 aa		18.85	■□□□□ 0.61
VARS-223	ENST00000474643	TNNI2	P48788	182 aa		18.84	■□□□□ 0.61
VARS-223	ENST00000474643	PTPN12	Q05209	780 aa	Known RBP	18.84	■□□□□ 0.61
VARS-223	ENST00000474643	IREB2	P48200	963 aa	Known RBP	18.83	■□□□□ 0.6
VARS-223	ENST00000474643	RASA3	Q14644	834 aa		18.83	■□□□□ 0.6
VARS-223	ENST00000474643	ARHGAP45	Q92619	1136 aa		18.83	■□□□□ 0.6
VARS-223	ENST00000474643	SIL1	Q9H173	461 aa		18.83	■□□□□ 0.6
VARS-223	ENST00000474643	TMOD2	Q9NZR1	351 aa		18.83	■□□□□ 0.6
VARS-223	ENST00000474643	EYA2	O00167	538 aa		18.82	■□□□□ 0.6
VARS-223	ENST00000474643	ZKSCAN2	Q63HK3	967 aa		18.82	■□□□□ 0.6
VARS-223	ENST00000474643	FBXO33	Q7Z6M2	555 aa		18.82	■□□□□ 0.6
VARS-223	ENST00000474643	DZIP1L	Q8IYY4	767 aa	Known RBP	18.82	■□□□□ 0.6
VARS-223	ENST00000474643	TEKT1	Q969V4	418 aa		18.82	■□□□□ 0.6
VARS-223	ENST00000474643	TDRD3	Q9H7E2	651 aa	Known RBP	18.82	■□□□□ 0.6
VARS-223	ENST00000474643	FZD1	Q9UP38	647 aa		18.82	■□□□□ 0.6
VARS-223	ENST00000474643	ECM29	Q5VYK3	1845 aa		18.81	■□□□□ 0.6

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