RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PCDHAC2Q9Y5I4 1007 aa23.38■■□□□ 1.33
COL7A1-209ENST00000474432 GYG1P46976 350 aa23.37■■□□□ 1.33
COL7A1-209ENST00000474432 RFX5P48382 616 aaPredicted RBP23.37■■□□□ 1.33
COL7A1-209ENST00000474432 FKBP1AP62942 108 aaKnown RBP23.37■■□□□ 1.33
COL7A1-209ENST00000474432 NOGQ13253 232 aa23.37■■□□□ 1.33
COL7A1-209ENST00000474432 JAG2Q9Y219 1238 aa23.37■■□□□ 1.33
COL7A1-209ENST00000474432 FAM205AQ6ZU69 1335 aa23.36■■□□□ 1.33
COL7A1-209ENST00000474432 MROH5Q6ZUA9 1318 aa23.36■■□□□ 1.33
COL7A1-209ENST00000474432 MOB2Q70IA6 237 aa23.36■■□□□ 1.33
COL7A1-209ENST00000474432 MTMR14Q8NCE2 650 aa23.36■■□□□ 1.33
COL7A1-209ENST00000474432 ECM29Q5VYK3 1845 aa23.36■■□□□ 1.33
COL7A1-209ENST00000474432 RARSP54136 660 aaKnown RBP23.35■■□□□ 1.33
COL7A1-209ENST00000474432 TSKSQ9UJT2 592 aa23.35■■□□□ 1.33
COL7A1-209ENST00000474432 HDAC9Q9UKV0 1011 aa23.35■■□□□ 1.33
COL7A1-209ENST00000474432 AOX1Q06278 1338 aa23.34■■□□□ 1.33
COL7A1-209ENST00000474432 SLC10A3P09131 477 aa23.34■■□□□ 1.33
COL7A1-209ENST00000474432 ZNF157P51786 506 aaPredicted RBP23.34■■□□□ 1.33
COL7A1-209ENST00000474432 HIBADHP31937 336 aaKnown RBP23.33■■□□□ 1.33
COL7A1-209ENST00000474432 FKBP1BP68106 108 aa23.33■■□□□ 1.33
COL7A1-209ENST00000474432 FBXO33Q7Z6M2 555 aa23.33■■□□□ 1.33
COL7A1-209ENST00000474432 CCDC102AQ96A19 550 aa23.33■■□□□ 1.33
COL7A1-209ENST00000474432 BEGAINQ9BUH8 593 aa23.33■■□□□ 1.33
COL7A1-209ENST00000474432 ARAP2Q8WZ64 1704 aa23.33■■□□□ 1.32
COL7A1-209ENST00000474432 F8W031 263 aaPredicted RBP23.32■■□□□ 1.32
COL7A1-209ENST00000474432 PDE8BO95263 885 aa23.32■■□□□ 1.32
COL7A1-209ENST00000474432 KIF23Q02241 960 aaPredicted RBP23.32■■□□□ 1.32
COL7A1-209ENST00000474432 MIER1Q8N108 512 aa23.32■■□□□ 1.32
COL7A1-209ENST00000474432 CAPN15O75808 1086 aa23.31■■□□□ 1.32
COL7A1-209ENST00000474432 PTPN12Q05209 780 aaKnown RBP23.31■■□□□ 1.32
COL7A1-209ENST00000474432 DLGAP5Q15398 846 aa23.31■■□□□ 1.32
COL7A1-209ENST00000474432 METTL24Q5JXM2 366 aa23.31■■□□□ 1.32
COL7A1-209ENST00000474432 RASAL3Q86YV0 1011 aa23.31■■□□□ 1.32
COL7A1-209ENST00000474432 PRMT6Q96LA8 375 aaPredicted RBP23.31■■□□□ 1.32
COL7A1-209ENST00000474432 SPDYE2BA6NHP3 402 aa23.3■■□□□ 1.32
COL7A1-209ENST00000474432 UBE2Q2LH0YL09 131 aa23.3■■□□□ 1.32
COL7A1-209ENST00000474432 SPDYE6P0CI01 402 aa23.3■■□□□ 1.32
COL7A1-209ENST00000474432 FGFR2P21802 821 aa23.3■■□□□ 1.32
COL7A1-209ENST00000474432 CFAP100Q494V2 611 aa23.3■■□□□ 1.32
COL7A1-209ENST00000474432 APOBEC3FQ8IUX4 373 aaKnown RBP23.3■■□□□ 1.32
COL7A1-209ENST00000474432 API5Q9BZZ5 524 aaKnown RBP23.3■■□□□ 1.32
COL7A1-209ENST00000474432 CASP8AP2Q9UKL3 1982 aa23.3■■□□□ 1.32
COL7A1-209ENST00000474432 CA12O43570 354 aa23.29■■□□□ 1.32
COL7A1-209ENST00000474432 GRIK5Q16478 980 aa23.29■■□□□ 1.32
COL7A1-209ENST00000474432 ATG9AQ7Z3C6 839 aa23.29■■□□□ 1.32
COL7A1-209ENST00000474432 EYA2O00167 538 aa23.28■■□□□ 1.32
COL7A1-209ENST00000474432 MFSD14BQ5SR56 506 aa23.28■■□□□ 1.32
COL7A1-209ENST00000474432 CSRNP1Q96S65 589 aa23.28■■□□□ 1.32
COL7A1-209ENST00000474432 SSC5DA1L4H1 1573 aa23.27■■□□□ 1.32
COL7A1-209ENST00000474432 UBTFL1P0CB47 393 aaPredicted RBP23.27■■□□□ 1.32
COL7A1-209ENST00000474432 ARHGAP45Q92619 1136 aa23.27■■□□□ 1.32
COL7A1-209ENST00000474432 DEFB129Q9H1M3 183 aa23.27■■□□□ 1.32
COL7A1-209ENST00000474432 IQSEC3Q9UPP2 1182 aaPredicted RBP23.27■■□□□ 1.32
COL7A1-209ENST00000474432 AKAP11Q9UKA4 1901 aa23.26■■□□□ 1.31
COL7A1-209ENST00000474432 COL1A1P02452 1464 aaPredicted RBP23.26■■□□□ 1.31
COL7A1-209ENST00000474432 BCAMP50895 628 aa23.26■■□□□ 1.31
COL7A1-209ENST00000474432 INTS3Q68E01 1043 aaKnown RBP23.26■■□□□ 1.31
COL7A1-209ENST00000474432 MEIS3Q99687 375 aa23.26■■□□□ 1.31
COL7A1-209ENST00000474432 TNNQ9UQP3 1299 aa23.26■■□□□ 1.31
COL7A1-209ENST00000474432 CLRN2A0PK11 232 aa23.25■■□□□ 1.31
COL7A1-209ENST00000474432 TTF2Q9UNY4 1162 aaKnown RBP23.25■■□□□ 1.31
COL7A1-209ENST00000474432 FZD1Q9UP38 647 aa23.25■■□□□ 1.31
COL7A1-209ENST00000474432 LRRFIP2Q9Y608 721 aaKnown RBP23.25■■□□□ 1.31
COL7A1-209ENST00000474432 LDLRAD1Q5T700 205 aa23.24■■□□□ 1.31
COL7A1-209ENST00000474432 DIEXFQ68CQ4 756 aaKnown RBP23.24■■□□□ 1.31
COL7A1-209ENST00000474432 RNF186Q9NXI6 227 aa23.24■■□□□ 1.31
COL7A1-209ENST00000474432 KIF16BQ96L93 1317 aa23.24■■□□□ 1.31
COL7A1-209ENST00000474432 BCAR3O75815 825 aa23.23■■□□□ 1.31
COL7A1-209ENST00000474432 PUM3Q15397 648 aaKnown RBP23.23■■□□□ 1.31
COL7A1-209ENST00000474432 SERPINA10Q9UK55 444 aa23.23■■□□□ 1.31
COL7A1-209ENST00000474432 NF2P35240 595 aa23.22■■□□□ 1.31
COL7A1-209ENST00000474432 PRKG1Q13976 671 aa23.22■■□□□ 1.31
COL7A1-209ENST00000474432 CAVIN4Q5BKX8 364 aa23.22■■□□□ 1.31
COL7A1-209ENST00000474432 SAGE1Q9NXZ1 904 aa23.22■■□□□ 1.31
COL7A1-209ENST00000474432 CIAO1O76071 339 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 TRIM27P14373 513 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 CHAF1AQ13111 956 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-209ENST00000474432 TTLL12Q14166 644 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-209ENST00000474432 MAP3K11Q16584 847 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 SPDYE2Q495Y8 402 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 VPS37DQ86XT2 251 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 SIL1Q9H173 461 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 ZNF70Q9UC06 446 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-209ENST00000474432 FBXO3Q9UK99 471 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 PA2G4Q9UQ80 394 aaKnown RBP23.21■■□□□ 1.31
COL7A1-209ENST00000474432 PPP2R3BQ9Y5P8 575 aa23.21■■□□□ 1.31
COL7A1-209ENST00000474432 MYH13Q9UKX3 1938 aa23.2■■□□□ 1.3
COL7A1-209ENST00000474432 TRPA1O75762 1119 aa23.2■■□□□ 1.3
COL7A1-209ENST00000474432 CRKP46108 304 aa23.2■■□□□ 1.3
COL7A1-209ENST00000474432 RBM5P52756 815 aaKnown RBP eCLIP23.2■■□□□ 1.3
COL7A1-209ENST00000474432 NBPF12Q5TAG4 269 aaPredicted RBP23.2■■□□□ 1.3
COL7A1-209ENST00000474432 DZIP1LQ8IYY4 767 aaKnown RBP23.2■■□□□ 1.3
COL7A1-209ENST00000474432 LPIN2Q92539 896 aa23.2■■□□□ 1.3
COL7A1-209ENST00000474432 ABHD8Q96I13 439 aa23.2■■□□□ 1.3
COL7A1-209ENST00000474432 TDRD3Q9H7E2 651 aaKnown RBP23.2■■□□□ 1.3
COL7A1-209ENST00000474432 MYO1BO43795 1136 aa23.19■■□□□ 1.3
COL7A1-209ENST00000474432 IFIT1P09914 478 aaKnown RBP23.19■■□□□ 1.3
COL7A1-209ENST00000474432 RASA3Q14644 834 aa23.19■■□□□ 1.3
COL7A1-209ENST00000474432 ARMC9Q7Z3E5 817 aa23.19■■□□□ 1.3
COL7A1-209ENST00000474432 VEZTQ9HBM0 779 aa23.19■■□□□ 1.3
COL7A1-209ENST00000474432 COPRSQ9NQ92 184 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms