RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 ATG9AQ7Z3C6 839 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 FBXO33Q7Z6M2 555 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 SULF1Q8IWU6 871 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 FRAT1Q92837 279 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-203ENST00000474391 TNNQ9UQP3 1299 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 THSD7BQ9C0I4 1608 aa13.17□□□□□ -0.3
COL4A1-203ENST00000474391 PUM3Q15397 648 aaKnown RBP13.16□□□□□ -0.3
COL4A1-203ENST00000474391 ZKSCAN2Q63HK3 967 aa13.16□□□□□ -0.3
COL4A1-203ENST00000474391 MTMR14Q8NCE2 650 aa13.16□□□□□ -0.3
COL4A1-203ENST00000474391 ZNF408Q9H9D4 720 aa13.16□□□□□ -0.3
COL4A1-203ENST00000474391 COPRSQ9NQ92 184 aa13.16□□□□□ -0.3
COL4A1-203ENST00000474391 HDAC9Q9UKV0 1011 aa13.16□□□□□ -0.3
COL4A1-203ENST00000474391 ECE1P42892 770 aa13.15□□□□□ -0.3
COL4A1-203ENST00000474391 CYP4F22Q6NT55 531 aa13.15□□□□□ -0.3
COL4A1-203ENST00000474391 CLUAP1Q96AJ1 413 aa13.15□□□□□ -0.3
COL4A1-203ENST00000474391 CDCA5Q96FF9 252 aa13.15□□□□□ -0.3
COL4A1-203ENST00000474391 CAPNS2Q96L46 248 aa13.15□□□□□ -0.3
COL4A1-203ENST00000474391 POLR2AP24928 1970 aaKnown RBP13.14□□□□□ -0.31
COL4A1-203ENST00000474391 CAVIN4Q5BKX8 364 aa13.14□□□□□ -0.31
COL4A1-203ENST00000474391 LPIN2Q92539 896 aa13.14□□□□□ -0.31
COL4A1-203ENST00000474391 GBA2Q9HCG7 927 aaPredicted RBP13.14□□□□□ -0.31
COL4A1-203ENST00000474391 WBP1LQ9NX94 342 aa13.14□□□□□ -0.31
COL4A1-203ENST00000474391 IFIT1P09914 478 aaKnown RBP13.13□□□□□ -0.31
COL4A1-203ENST00000474391 IL15P40933 162 aaPredicted RBP13.13□□□□□ -0.31
COL4A1-203ENST00000474391 HUNKP57058 714 aa13.13□□□□□ -0.31
COL4A1-203ENST00000474391 MFSD14BQ5SR56 506 aa13.13□□□□□ -0.31
COL4A1-203ENST00000474391 TMEM57Q8N5G2 664 aa13.13□□□□□ -0.31
COL4A1-203ENST00000474391 JAG2Q9Y219 1238 aa13.13□□□□□ -0.31
COL4A1-203ENST00000474391 SPDYE2BA6NHP3 402 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 SRGAP3O43295 1099 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 GNAI2P04899 355 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 SPDYE6P0CI01 402 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 MAP2K2P36507 400 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 BCAMP50895 628 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 FKBP1BP68106 108 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 MAP2K1Q02750 393 aaPredicted RBP13.12□□□□□ -0.31
COL4A1-203ENST00000474391 DLGAP5Q15398 846 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 VPS37DQ86XT2 251 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 C2orf69Q8N8R5 385 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 SIL1Q9H173 461 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 CEP126Q9P2H0 1117 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 PA2G4Q9UQ80 394 aaKnown RBP13.12□□□□□ -0.31
COL4A1-203ENST00000474391 ARAP2Q8WZ64 1704 aa13.12□□□□□ -0.31
COL4A1-203ENST00000474391 F8W031 263 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-203ENST00000474391 ZBTB22O15209 634 aa13.11□□□□□ -0.31
COL4A1-203ENST00000474391 SLC5A1P13866 664 aa13.11□□□□□ -0.31
COL4A1-203ENST00000474391 CFAP100Q494V2 611 aa13.11□□□□□ -0.31
COL4A1-203ENST00000474391 PAXIP1Q6ZW49 1069 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-203ENST00000474391 APOBEC3FQ8IUX4 373 aaKnown RBP13.11□□□□□ -0.31
COL4A1-203ENST00000474391 TBC1D22AQ8WUA7 517 aa13.11□□□□□ -0.31
COL4A1-203ENST00000474391 PRMT6Q96LA8 375 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-203ENST00000474391 SERPINA10Q9UK55 444 aa13.11□□□□□ -0.31
COL4A1-203ENST00000474391 SCAF8Q9UPN6 1271 aaKnown RBP13.11□□□□□ -0.31
COL4A1-203ENST00000474391 IQSEC3Q9UPP2 1182 aaPredicted RBP13.11□□□□□ -0.31
COL4A1-203ENST00000474391 PCDHAC2Q9Y5I4 1007 aa13.11□□□□□ -0.31
COL4A1-203ENST00000474391 COL1A1P02452 1464 aaPredicted RBP13.1□□□□□ -0.31
COL4A1-203ENST00000474391 FOXN1O15353 648 aa13.1□□□□□ -0.31
COL4A1-203ENST00000474391 RLBP1P12271 317 aa13.1□□□□□ -0.31
COL4A1-203ENST00000474391 GRIK5Q16478 980 aa13.1□□□□□ -0.31
COL4A1-203ENST00000474391 ATP2B3Q16720 1220 aa13.1□□□□□ -0.31
COL4A1-203ENST00000474391 RGMBQ6NW40 437 aa13.1□□□□□ -0.31
COL4A1-203ENST00000474391 DZIP1LQ8IYY4 767 aaKnown RBP13.1□□□□□ -0.31
COL4A1-203ENST00000474391 TTF2Q9UNY4 1162 aaKnown RBP13.1□□□□□ -0.31
COL4A1-203ENST00000474391 PAPPA2Q9BXP8 1791 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 FAM155AB1AL88 458 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-203ENST00000474391 ZBTB7BO15156 539 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-203ENST00000474391 AOC2O75106 756 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 HDLBPQ00341 1268 aaKnown RBP13.09□□□□□ -0.31
COL4A1-203ENST00000474391 NOGQ13253 232 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 GRM1Q13255 1194 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 COL13A1Q5TAT6 717 aaPredicted RBP13.09□□□□□ -0.31
COL4A1-203ENST00000474391 PRAMEF18Q5VWM3 479 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 FTSJ3Q8IY81 847 aaKnown RBP13.09□□□□□ -0.31
COL4A1-203ENST00000474391 MRIQ9BWK5 157 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 DEFB129Q9H1M3 183 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 SUGT1Q9Y2Z0 365 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 AOX1Q06278 1338 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 ECM29Q5VYK3 1845 aa13.09□□□□□ -0.31
COL4A1-203ENST00000474391 PNMA6EA0A0J9YXQ4 647 aa13.08□□□□□ -0.32
COL4A1-203ENST00000474391 MYO1BO43795 1136 aa13.08□□□□□ -0.32
COL4A1-203ENST00000474391 FRAT2O75474 233 aaPredicted RBP13.08□□□□□ -0.32
COL4A1-203ENST00000474391 CTCFP49711 727 aaPredicted RBP13.08□□□□□ -0.32
COL4A1-203ENST00000474391 CHAF1AQ13111 956 aaPredicted RBP13.08□□□□□ -0.32
COL4A1-203ENST00000474391 CCDC102AQ96A19 550 aa13.08□□□□□ -0.32
COL4A1-203ENST00000474391 AIDAQ96BJ3 306 aa13.08□□□□□ -0.32
COL4A1-203ENST00000474391 PPP2R3BQ9Y5P8 575 aa13.08□□□□□ -0.32
COL4A1-203ENST00000474391 SEMA3EO15041 775 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 SLC10A3P09131 477 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 NF2P35240 595 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 CRKP46108 304 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 ZNF157P51786 506 aaPredicted RBP13.07□□□□□ -0.32
COL4A1-203ENST00000474391 POLA2Q14181 598 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 SPDYE2Q495Y8 402 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 WDR66Q8TBY9 1149 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 SSH3Q8TE77 659 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 PRDM10Q9NQV6 1147 aa13.07□□□□□ -0.32
COL4A1-203ENST00000474391 CLRN2A0PK11 232 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 PHKA1P46020 1223 aa13.06□□□□□ -0.32
COL4A1-203ENST00000474391 RBM5P52756 815 aaKnown RBP eCLIP13.06□□□□□ -0.32
COL4A1-203ENST00000474391 TIMM10P62072 90 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms