RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 MOB2Q70IA6 237 aa23.71■■□□□ 1.39
CCDC88B-206ENST00000473405 RASAL3Q86YV0 1011 aa23.71■■□□□ 1.39
CCDC88B-206ENST00000473405 TRMT2AQ8IZ69 625 aaKnown RBP23.71■■□□□ 1.39
CCDC88B-206ENST00000473405 HDAC9Q9UKV0 1011 aa23.71■■□□□ 1.39
CCDC88B-206ENST00000473405 COL1A1P02452 1464 aaPredicted RBP23.69■■□□□ 1.38
CCDC88B-206ENST00000473405 FKBP1AP62942 108 aaKnown RBP23.69■■□□□ 1.38
CCDC88B-206ENST00000473405 ABHD8Q96I13 439 aa23.69■■□□□ 1.38
CCDC88B-206ENST00000473405 JAG2Q9Y219 1238 aa23.69■■□□□ 1.38
CCDC88B-206ENST00000473405 RIPOR2Q9Y4F9 1068 aa23.69■■□□□ 1.38
CCDC88B-206ENST00000473405 UBE4AQ14139 1066 aa23.68■■□□□ 1.38
CCDC88B-206ENST00000473405 ALDH1L2Q3SY69 923 aa23.68■■□□□ 1.38
CCDC88B-206ENST00000473405 APOBEC3FQ8IUX4 373 aaKnown RBP23.68■■□□□ 1.38
CCDC88B-206ENST00000473405 MTMR14Q8NCE2 650 aa23.68■■□□□ 1.38
CCDC88B-206ENST00000473405 USP44Q9H0E7 712 aa23.68■■□□□ 1.38
CCDC88B-206ENST00000473405 PCDHAC2Q9Y5I4 1007 aa23.68■■□□□ 1.38
CCDC88B-206ENST00000473405 FAM205AQ6ZU69 1335 aa23.67■■□□□ 1.38
CCDC88B-206ENST00000473405 SAGE1Q9NXZ1 904 aa23.67■■□□□ 1.38
CCDC88B-206ENST00000473405 SSC5DA1L4H1 1573 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 MROH5Q6ZUA9 1318 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 LAMB1P07942 1786 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 UBE2Q2LH0YL09 131 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 GYG1P46976 350 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 DLGAP5Q15398 846 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 TDRD7Q8NHU6 1098 aaKnown RBP23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 SMC4Q9NTJ3 1288 aa23.66■■□□□ 1.38
CCDC88B-206ENST00000473405 AOX1Q06278 1338 aa23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 F8W031 263 aaPredicted RBP23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 CCER2I3L3R5 266 aa23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 LRRC24Q50LG9 513 aa23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 VGLL2Q8N8G2 317 aa23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 FAM84BQ96KN1 310 aaPredicted RBP23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 CSRNP1Q96S65 589 aa23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 MYH13Q9UKX3 1938 aa23.65■■□□□ 1.38
CCDC88B-206ENST00000473405 SPDYE2BA6NHP3 402 aa23.64■■□□□ 1.37
CCDC88B-206ENST00000473405 SPDYE6P0CI01 402 aa23.64■■□□□ 1.37
CCDC88B-206ENST00000473405 RNF186Q9NXI6 227 aa23.64■■□□□ 1.37
CCDC88B-206ENST00000473405 HIBADHP31937 336 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-206ENST00000473405 NF2P35240 595 aa23.63■■□□□ 1.37
CCDC88B-206ENST00000473405 CFAP100Q494V2 611 aa23.63■■□□□ 1.37
CCDC88B-206ENST00000473405 KLHDC4Q8TBB5 520 aa23.63■■□□□ 1.37
CCDC88B-206ENST00000473405 TNRC18O15417 2968 aaPredicted RBP23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 OTOFQ9HC10 1997 aa23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 TRPA1O75762 1119 aa23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 TTLL12Q14166 644 aaPredicted RBP23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 MFSD14BQ5SR56 506 aa23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 PRMT6Q96LA8 375 aaPredicted RBP23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 DEFB129Q9H1M3 183 aa23.62■■□□□ 1.37
CCDC88B-206ENST00000473405 CT47B1P0C2W7 299 aaPredicted RBP23.61■■□□□ 1.37
CCDC88B-206ENST00000473405 METTL24Q5JXM2 366 aa23.61■■□□□ 1.37
CCDC88B-206ENST00000473405 CLRN2A0PK11 232 aa23.6■■□□□ 1.37
CCDC88B-206ENST00000473405 REM2Q8IYK8 340 aaPredicted RBP23.6■■□□□ 1.37
CCDC88B-206ENST00000473405 PDE8BO95263 885 aa23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 RFX5P48382 616 aaPredicted RBP23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 PTPN12Q05209 780 aaKnown RBP23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 PRKG1Q13976 671 aa23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 FBXO33Q7Z6M2 555 aa23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 MCOLN1Q9GZU1 580 aa23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 FZD1Q9UP38 647 aa23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 PPP2R3BQ9Y5P8 575 aa23.59■■□□□ 1.37
CCDC88B-206ENST00000473405 HTTP42858 3142 aa23.58■■□□□ 1.37
CCDC88B-206ENST00000473405 MYO1BO43795 1136 aa23.58■■□□□ 1.37
CCDC88B-206ENST00000473405 LDLRAD1Q5T700 205 aa23.58■■□□□ 1.37
CCDC88B-206ENST00000473405 ARMC9Q7Z3E5 817 aa23.57■■□□□ 1.36
CCDC88B-206ENST00000473405 SERPINA10Q9UK55 444 aa23.57■■□□□ 1.36
CCDC88B-206ENST00000473405 NOB1Q9ULX3 412 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-206ENST00000473405 ANGEL1Q9UNK9 670 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-206ENST00000473405 TTF2Q9UNY4 1162 aaKnown RBP23.57■■□□□ 1.36
CCDC88B-206ENST00000473405 IQSEC3Q9UPP2 1182 aaPredicted RBP23.57■■□□□ 1.36
CCDC88B-206ENST00000473405 RBM5P52756 815 aaKnown RBP eCLIP23.56■■□□□ 1.36
CCDC88B-206ENST00000473405 GRIK5Q16478 980 aa23.56■■□□□ 1.36
CCDC88B-206ENST00000473405 VEZTQ9HBM0 779 aa23.56■■□□□ 1.36
CCDC88B-206ENST00000473405 KIF16BQ96L93 1317 aa23.56■■□□□ 1.36
CCDC88B-206ENST00000473405 FGFR2P21802 821 aa23.55■■□□□ 1.36
CCDC88B-206ENST00000473405 DGKZQ13574 1117 aa23.55■■□□□ 1.36
CCDC88B-206ENST00000473405 MAP3K11Q16584 847 aa23.55■■□□□ 1.36
CCDC88B-206ENST00000473405 VPS37DQ86XT2 251 aa23.55■■□□□ 1.36
CCDC88B-206ENST00000473405 EYA2O00167 538 aa23.54■■□□□ 1.36
CCDC88B-206ENST00000473405 RARSP54136 660 aaKnown RBP23.54■■□□□ 1.36
CCDC88B-206ENST00000473405 MKRN3Q13064 507 aaKnown RBP23.54■■□□□ 1.36
CCDC88B-206ENST00000473405 PUM3Q15397 648 aaKnown RBP23.54■■□□□ 1.36
CCDC88B-206ENST00000473405 SPDYE2Q495Y8 402 aa23.54■■□□□ 1.36
CCDC88B-206ENST00000473405 CAVIN4Q5BKX8 364 aa23.54■■□□□ 1.36
CCDC88B-206ENST00000473405 UBTFL1P0CB47 393 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 TM4SF4P48230 202 aa23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 BCAMP50895 628 aa23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 CHAF1AQ13111 956 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 RASA3Q14644 834 aa23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 NBPF12Q5TAG4 269 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 ATG9AQ7Z3C6 839 aa23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 ZNF70Q9UC06 446 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-206ENST00000473405 CCDC85CA6NKD9 419 aa23.52■■□□□ 1.36
CCDC88B-206ENST00000473405 CRKP46108 304 aa23.52■■□□□ 1.36
CCDC88B-206ENST00000473405 SPRYD7Q5W111 196 aa23.52■■□□□ 1.36
CCDC88B-206ENST00000473405 DZIP1LQ8IYY4 767 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-206ENST00000473405 API5Q9BZZ5 524 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-206ENST00000473405 TDRD3Q9H7E2 651 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-206ENST00000473405 TBC1D22AQ8WUA7 517 aa23.51■■□□□ 1.35
CCDC88B-206ENST00000473405 CLMNQ96JQ2 1002 aa23.51■■□□□ 1.35
CCDC88B-206ENST00000473405 PPP1R12BO60237 982 aaPredicted RBP23.5■■□□□ 1.35
CCDC88B-206ENST00000473405 IFIT1P09914 478 aaKnown RBP23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms