RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	AFF1	P51825	1210 aa	Known RBP	6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	MAP3K10	Q02779	954 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	SV2B	Q7L1I2	683 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	ZNF417	Q8TAU3	575 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	ZNF587	Q96SQ5	575 aa	Predicted RBP	6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	CEP44	Q9C0F1	390 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	AKAP2	Q9Y2D5	859 aa		6.31	□□□□□ -1.4
PTCD3-209	ENST00000472044	HOXB4	P17483	251 aa	Predicted RBP	6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	COL9A3	Q14050	684 aa	Predicted RBP	6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	GDF6	Q6KF10	455 aa	Predicted RBP	6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	WHAMM	Q8TF30	809 aa		6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	NECAB3	Q96P71	396 aa	Predicted RBP	6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	LACRT	Q9GZZ8	138 aa		6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	SEC31B	Q9NQW1	1179 aa		6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	TTF2	Q9UNY4	1162 aa	Known RBP	6.3	□□□□□ -1.4
PTCD3-209	ENST00000472044	FAM177B	A6PVY3	158 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	B3GALT4	O96024	378 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	PCDH1	Q08174	1060 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	FAAP100	Q0VG06	881 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	ZNF423	Q2M1K9	1284 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	ZNF385C	Q66K41	422 aa	Predicted RBP	6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	HS2ST1	Q7LGA3	356 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	ERMP1	Q7Z2K6	904 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	WNT8B	Q93098	351 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	RSRP1	Q9BUV0	290 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044	ENAM	Q9NRM1	1142 aa		6.29	□□□□□ -1.4
PTCD3-209	ENST00000472044		H3BRJ5	948 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	EIF4EBP3	O60516	100 aa	Predicted RBP	6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	ARHGEF15	O94989	841 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	ESRRA	P11474	423 aa	Predicted RBP	6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	RLBP1	P12271	317 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	NID1	P14543	1247 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	EPHA1	P21709	976 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	DGKG	P49619	791 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	CABP4	P57796	275 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	MSL1	Q68DK7	614 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	C8orf86	Q6ZUL3	223 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	NT5DC4	Q86YG4	428 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	IL22RA1	Q8N6P7	574 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	SOX17	Q9H6I2	414 aa	Predicted RBP	6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	SH2B1	Q9NRF2	756 aa	Predicted RBP	6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	TMEM39A	Q9NV64	488 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	PPME1	Q9Y570	386 aa		6.28	□□□□□ -1.4
PTCD3-209	ENST00000472044	SOX1	O00570	391 aa	Predicted RBP	6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	ENC1	O14682	589 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	AMPD1	P23109	780 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	RAD51AP2	Q09MP3	1159 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	PWP1	Q13610	501 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	CCDC85B	Q15834	202 aa	Predicted RBP	6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	TPTE2	Q6XPS3	522 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	WFDC8	Q8IUA0	241 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	TGIF2	Q9GZN2	237 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	SRA1	Q9HD15	236 aa	Known RBP	6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	OSGEP	Q9NPF4	335 aa		6.27	□□□□□ -1.41
PTCD3-209	ENST00000472044	ERCC5	P28715	1186 aa	Predicted RBP	6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	PIP4K2B	P78356	416 aa		6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	PPP2R3A	Q06190	1150 aa		6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	IKBKE	Q14164	716 aa		6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	MAP4K3	Q8IVH8	894 aa		6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	SVOP	Q8N4V2	548 aa		6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	GPN3	Q9UHW5	284 aa	Predicted RBP	6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	GGT7	Q9UJ14	662 aa		6.26	□□□□□ -1.41
PTCD3-209	ENST00000472044	TM4SF5	O14894	197 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	FBXO24	O75426	580 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	LOR	P23490	312 aa	Predicted RBP	6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	RPS26	P62854	115 aa	Known RBP	6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	C9orf131	Q5VYM1	1079 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	FAM117B	Q6P1L5	589 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	DTWD1	Q8N5C7	304 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	NEDD1	Q8NHV4	660 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	DDX54	Q8TDD1	881 aa	Known RBP	6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	C8orf37	Q96NL8	207 aa		6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	DDX41	Q9UJV9	622 aa	Known RBP	6.25	□□□□□ -1.41
PTCD3-209	ENST00000472044	LINC01387	J3KSC0	135 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	FSCN2	O14926	492 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	CELA3A	P09093	270 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	BMP6	P22004	513 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	NME2	P22392	152 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	ARL4D	P49703	201 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	RACK1	P63244	317 aa	Known RBP	6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	SCARA3	Q6AZY7	606 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	LINC00114	Q6XXX2	140 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	USP48	Q86UV5	1035 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	RELL1	Q8IUW5	271 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	KLHL23	Q8NBE8	558 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	TRIM56	Q9BRZ2	755 aa	Known RBP	6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	SAMM50	Q9Y512	469 aa		6.24	□□□□□ -1.41
PTCD3-209	ENST00000472044	LIG3	P49916	1009 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	ZC3H6	P61129	1189 aa	Known RBP	6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	C19orf57	Q0VDD7	668 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	AP3B2	Q13367	1082 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	SETDB1	Q15047	1291 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	AGMO	Q6ZNB7	445 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	DMRTC2	Q8IXT2	367 aa	Predicted RBP	6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	ZNF654	Q8IZM8	581 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	TMEM74	Q96NL1	305 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	NRSN2	Q9GZP1	204 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	KCNQ5	Q9NR82	932 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	KBTBD4	Q9NVX7	518 aa		6.23	□□□□□ -1.41
PTCD3-209	ENST00000472044	CYP8B1	Q9UNU6	501 aa		6.23	□□□□□ -1.41

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