RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 SCAF8Q9UPN6 1271 aaKnown RBP20.55■□□□□ 0.88
COL9A3-208ENST00000469802 RIPOR2Q9Y4F9 1068 aa20.55■□□□□ 0.88
COL9A3-208ENST00000469802 SLC10A3P09131 477 aa20.54■□□□□ 0.88
COL9A3-208ENST00000469802 UBE4AQ14139 1066 aa20.54■□□□□ 0.88
COL9A3-208ENST00000469802 CCDC102AQ96A19 550 aa20.54■□□□□ 0.88
COL9A3-208ENST00000469802 SMC4Q9NTJ3 1288 aa20.54■□□□□ 0.88
COL9A3-208ENST00000469802 HDAC9Q9UKV0 1011 aa20.54■□□□□ 0.88
COL9A3-208ENST00000469802 PLIN1O60240 522 aa20.53■□□□□ 0.88
COL9A3-208ENST00000469802 MTMR14Q8NCE2 650 aa20.53■□□□□ 0.88
COL9A3-208ENST00000469802 FAM205AQ6ZU69 1335 aa20.53■□□□□ 0.88
COL9A3-208ENST00000469802 MROH5Q6ZUA9 1318 aa20.53■□□□□ 0.88
COL9A3-208ENST00000469802 CAPN15O75808 1086 aa20.52■□□□□ 0.88
COL9A3-208ENST00000469802 ZNF157P51786 506 aaPredicted RBP20.52■□□□□ 0.88
COL9A3-208ENST00000469802 TSKSQ9UJT2 592 aa20.52■□□□□ 0.88
COL9A3-208ENST00000469802 RASAL3Q86YV0 1011 aa20.51■□□□□ 0.87
COL9A3-208ENST00000469802 APOBEC3FQ8IUX4 373 aaKnown RBP20.51■□□□□ 0.87
COL9A3-208ENST00000469802 VGLL2Q8N8G2 317 aa20.51■□□□□ 0.87
COL9A3-208ENST00000469802 TDRD7Q8NHU6 1098 aaKnown RBP20.51■□□□□ 0.87
COL9A3-208ENST00000469802 LRRC24Q50LG9 513 aa20.5■□□□□ 0.87
COL9A3-208ENST00000469802 PRAMEF18Q5VWM3 479 aa20.5■□□□□ 0.87
COL9A3-208ENST00000469802 FAM84BQ96KN1 310 aaPredicted RBP20.5■□□□□ 0.87
COL9A3-208ENST00000469802 SSC5DA1L4H1 1573 aa20.5■□□□□ 0.87
COL9A3-208ENST00000469802 OTOFQ9HC10 1997 aa20.49■□□□□ 0.87
COL9A3-208ENST00000469802 GYG1P46976 350 aa20.49■□□□□ 0.87
COL9A3-208ENST00000469802 KIF23Q02241 960 aaPredicted RBP20.49■□□□□ 0.87
COL9A3-208ENST00000469802 JAG2Q9Y219 1238 aa20.49■□□□□ 0.87
COL9A3-208ENST00000469802 HIBADHP31937 336 aaKnown RBP20.48■□□□□ 0.87
COL9A3-208ENST00000469802 RFX5P48382 616 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-208ENST00000469802 DLGAP5Q15398 846 aa20.48■□□□□ 0.87
COL9A3-208ENST00000469802 MOB2Q70IA6 237 aa20.48■□□□□ 0.87
COL9A3-208ENST00000469802 SAGE1Q9NXZ1 904 aa20.48■□□□□ 0.87
COL9A3-208ENST00000469802 PCDHAC2Q9Y5I4 1007 aa20.48■□□□□ 0.87
COL9A3-208ENST00000469802 SPDYE2BA6NHP3 402 aa20.47■□□□□ 0.87
COL9A3-208ENST00000469802 PDE8BO95263 885 aa20.47■□□□□ 0.87
COL9A3-208ENST00000469802 SPDYE6P0CI01 402 aa20.47■□□□□ 0.87
COL9A3-208ENST00000469802 KLHDC4Q8TBB5 520 aa20.47■□□□□ 0.87
COL9A3-208ENST00000469802 F8W031 263 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-208ENST00000469802 NF2P35240 595 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 CFAP100Q494V2 611 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 METTL24Q5JXM2 366 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 MFSD14BQ5SR56 506 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 FBXO33Q7Z6M2 555 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 NOB1Q9ULX3 412 aaKnown RBP20.46■□□□□ 0.87
COL9A3-208ENST00000469802 AOX1Q06278 1338 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 KIF16BQ96L93 1317 aa20.46■□□□□ 0.87
COL9A3-208ENST00000469802 UBE2Q2LH0YL09 131 aa20.45■□□□□ 0.86
COL9A3-208ENST00000469802 PRMT6Q96LA8 375 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-208ENST00000469802 CSRNP1Q96S65 589 aa20.45■□□□□ 0.86
COL9A3-208ENST00000469802 PPP2R3BQ9Y5P8 575 aa20.45■□□□□ 0.86
COL9A3-208ENST00000469802 RARSP54136 660 aaKnown RBP20.44■□□□□ 0.86
COL9A3-208ENST00000469802 REM2Q8IYK8 340 aaPredicted RBP20.44■□□□□ 0.86
COL9A3-208ENST00000469802 ABHD8Q96I13 439 aa20.44■□□□□ 0.86
COL9A3-208ENST00000469802 API5Q9BZZ5 524 aaKnown RBP20.44■□□□□ 0.86
COL9A3-208ENST00000469802 DEFB129Q9H1M3 183 aa20.44■□□□□ 0.86
COL9A3-208ENST00000469802 FGFR2P21802 821 aa20.43■□□□□ 0.86
COL9A3-208ENST00000469802 PTPN12Q05209 780 aaKnown RBP20.43■□□□□ 0.86
COL9A3-208ENST00000469802 RNF186Q9NXI6 227 aa20.43■□□□□ 0.86
COL9A3-208ENST00000469802 SERPINA10Q9UK55 444 aa20.43■□□□□ 0.86
COL9A3-208ENST00000469802 EYA2O00167 538 aa20.42■□□□□ 0.86
COL9A3-208ENST00000469802 MYO1BO43795 1136 aa20.42■□□□□ 0.86
COL9A3-208ENST00000469802 UBTFL1P0CB47 393 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-208ENST00000469802 TTLL12Q14166 644 aaPredicted RBP20.42■□□□□ 0.86
COL9A3-208ENST00000469802 PUM3Q15397 648 aaKnown RBP20.42■□□□□ 0.86
COL9A3-208ENST00000469802 LDLRAD1Q5T700 205 aa20.42■□□□□ 0.86
COL9A3-208ENST00000469802 CLRN2A0PK11 232 aa20.41■□□□□ 0.86
COL9A3-208ENST00000469802 MAP3K11Q16584 847 aa20.41■□□□□ 0.86
COL9A3-208ENST00000469802 SPDYE2Q495Y8 402 aa20.41■□□□□ 0.86
COL9A3-208ENST00000469802 ATG9AQ7Z3C6 839 aa20.41■□□□□ 0.86
COL9A3-208ENST00000469802 ARHGAP45Q92619 1136 aa20.41■□□□□ 0.86
COL9A3-208ENST00000469802 TTF2Q9UNY4 1162 aaKnown RBP20.41■□□□□ 0.86
COL9A3-208ENST00000469802 GRIK5Q16478 980 aa20.4■□□□□ 0.86
COL9A3-208ENST00000469802 CAVIN4Q5BKX8 364 aa20.4■□□□□ 0.86
COL9A3-208ENST00000469802 ARMC9Q7Z3E5 817 aa20.4■□□□□ 0.86
COL9A3-208ENST00000469802 VPS37DQ86XT2 251 aa20.4■□□□□ 0.86
COL9A3-208ENST00000469802 FBXO3Q9UK99 471 aa20.4■□□□□ 0.86
COL9A3-208ENST00000469802 IQSEC3Q9UPP2 1182 aaPredicted RBP20.4■□□□□ 0.86
COL9A3-208ENST00000469802 TRPA1O75762 1119 aa20.39■□□□□ 0.85
COL9A3-208ENST00000469802 TBC1D22AQ8WUA7 517 aa20.39■□□□□ 0.85
COL9A3-208ENST00000469802 VEZTQ9HBM0 779 aa20.39■□□□□ 0.85
COL9A3-208ENST00000469802 LRRFIP2Q9Y608 721 aaKnown RBP20.39■□□□□ 0.85
COL9A3-208ENST00000469802 CIAO1O76071 339 aa20.38■□□□□ 0.85
COL9A3-208ENST00000469802 IFIT1P09914 478 aaKnown RBP20.38■□□□□ 0.85
COL9A3-208ENST00000469802 BCAMP50895 628 aa20.38■□□□□ 0.85
COL9A3-208ENST00000469802 RBM5P52756 815 aaKnown RBP eCLIP20.38■□□□□ 0.851e-6■■■■□ 23.8
COL9A3-208ENST00000469802 INTS3Q68E01 1043 aaKnown RBP20.38■□□□□ 0.85
COL9A3-208ENST00000469802 MEIS3Q99687 375 aa20.38■□□□□ 0.85
COL9A3-208ENST00000469802 ANGEL1Q9UNK9 670 aaKnown RBP20.38■□□□□ 0.85
COL9A3-208ENST00000469802 FZD1Q9UP38 647 aa20.38■□□□□ 0.85
COL9A3-208ENST00000469802 CRKP46108 304 aa20.37■□□□□ 0.85
COL9A3-208ENST00000469802 HDLBPQ00341 1268 aaKnown RBP20.37■□□□□ 0.85
COL9A3-208ENST00000469802 PRKG1Q13976 671 aa20.37■□□□□ 0.85
COL9A3-208ENST00000469802 DZIP1LQ8IYY4 767 aaKnown RBP20.37■□□□□ 0.85
COL9A3-208ENST00000469802 LPIN2Q92539 896 aa20.37■□□□□ 0.85
COL9A3-208ENST00000469802 MCOLN1Q9GZU1 580 aa20.37■□□□□ 0.85
COL9A3-208ENST00000469802 ZNF70Q9UC06 446 aaPredicted RBP20.37■□□□□ 0.85
COL9A3-208ENST00000469802 TM4SF4P48230 202 aa20.36■□□□□ 0.85
COL9A3-208ENST00000469802 CHAF1AQ13111 956 aaPredicted RBP20.36■□□□□ 0.85
COL9A3-208ENST00000469802 TNFAIP1Q13829 316 aa20.36■□□□□ 0.85
COL9A3-208ENST00000469802 RASA3Q14644 834 aa20.36■□□□□ 0.85
COL9A3-208ENST00000469802 HDAC5Q9UQL6 1122 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms