RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 EAF2Q96CJ1 260 aaPredicted RBP14.71□□□□□ -0.05
VPS13D-204ENST00000469054 GNL3LQ9NVN8 582 aaKnown RBP14.71□□□□□ -0.05
VPS13D-204ENST00000469054 GPRC5DQ9NZD1 345 aa14.71□□□□□ -0.05
VPS13D-204ENST00000469054 HACL1Q9UJ83 578 aa14.71□□□□□ -0.05
VPS13D-204ENST00000469054 IQSEC3Q9UPP2 1182 aaPredicted RBP14.71□□□□□ -0.05
VPS13D-204ENST00000469054 FAM205AQ6ZU69 1335 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 ZNF609O15014 1411 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 EPS15P42566 896 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 FKBP1AP62942 108 aaKnown RBP14.7□□□□□ -0.06
VPS13D-204ENST00000469054 GORABQ5T7V8 394 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 CLASRPQ8N2M8 674 aaKnown RBP14.7□□□□□ -0.06
VPS13D-204ENST00000469054 GMLQ99445 158 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 DBNDD2Q9BQY9 259 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 MXD3Q9BW11 206 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 TAF1DQ9H5J8 278 aaPredicted RBP14.7□□□□□ -0.06
VPS13D-204ENST00000469054 IL1RAPL2Q9NP60 686 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 CNOT7Q9UIV1 285 aaKnown RBP14.7□□□□□ -0.06
VPS13D-204ENST00000469054 JAG2Q9Y219 1238 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 A0A1B0GUL6 1792 aa14.7□□□□□ -0.06
VPS13D-204ENST00000469054 MYO3BQ8WXR4 1341 aa14.69□□□□□ -0.06
VPS13D-204ENST00000469054 EPHX2P34913 555 aa14.69□□□□□ -0.06
VPS13D-204ENST00000469054 CHAF1AQ13111 956 aaPredicted RBP14.69□□□□□ -0.06
VPS13D-204ENST00000469054 AACSQ86V21 672 aa14.69□□□□□ -0.06
VPS13D-204ENST00000469054 MICALL2Q8IY33 904 aa14.69□□□□□ -0.06
VPS13D-204ENST00000469054 LRRCC1Q9C099 1032 aa14.69□□□□□ -0.06
VPS13D-204ENST00000469054 CCDC8Q9H0W5 538 aaPredicted RBP14.69□□□□□ -0.06
VPS13D-204ENST00000469054 H7C1D1 291 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 SEMA3EO15041 775 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 CCDC158Q5M9N0 1113 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 MFSD14BQ5SR56 506 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 CERS5Q8N5B7 392 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 RWDD1Q9H446 243 aaPredicted RBP14.68□□□□□ -0.06
VPS13D-204ENST00000469054 ADARB2Q9NS39 739 aaKnown RBP14.68□□□□□ -0.06
VPS13D-204ENST00000469054 DBNLQ9UJU6 430 aaKnown RBP14.68□□□□□ -0.06
VPS13D-204ENST00000469054 DENND2AQ9ULE3 1009 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 WDR90Q96KV7 1748 aa14.68□□□□□ -0.06
VPS13D-204ENST00000469054 SHTN1A0MZ66 631 aa14.67□□□□□ -0.06
VPS13D-204ENST00000469054 USP17L8P0C7I0 530 aa14.67□□□□□ -0.06
VPS13D-204ENST00000469054 TBC1D22AQ8WUA7 517 aa14.67□□□□□ -0.06
VPS13D-204ENST00000469054 GCC1Q96CN9 775 aa14.67□□□□□ -0.06
VPS13D-204ENST00000469054 TLR7Q9NYK1 1049 aaKnown RBP14.67□□□□□ -0.06
VPS13D-204ENST00000469054 SCN9AQ15858 1988 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 SMARCA5O60264 1052 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 IFIT2P09913 472 aaKnown RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 UQCRFS1P1P0C7P4 283 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 ARID4AP29374 1257 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 MMP14P50281 582 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 ZNF280AP59817 542 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 RASGRF1Q13972 1273 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 USP50Q70EL3 339 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 PNMA8AQ86V59 439 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 KIAA0825Q8IV33 1275 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 C16orf71Q8IYS4 520 aaPredicted RBP14.66□□□□□ -0.06
VPS13D-204ENST00000469054 OGFOD1Q8N543 542 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 WDR66Q8TBY9 1149 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 BCL11AQ9H165 835 aa14.66□□□□□ -0.06
VPS13D-204ENST00000469054 TOMM70O94826 608 aa14.65□□□□□ -0.06
VPS13D-204ENST00000469054 IGHDP01880 384 aa14.65□□□□□ -0.06
VPS13D-204ENST00000469054 EAPPQ56P03 285 aaPredicted RBP14.65□□□□□ -0.06
VPS13D-204ENST00000469054 TTC39AQ5SRH9 613 aa14.65□□□□□ -0.06
VPS13D-204ENST00000469054 SAMD7Q7Z3H4 446 aa14.65□□□□□ -0.06
VPS13D-204ENST00000469054 ZNF512BQ96KM6 892 aaPredicted RBP14.65□□□□□ -0.06
VPS13D-204ENST00000469054 HDAC9Q9UKV0 1011 aa14.65□□□□□ -0.06
VPS13D-204ENST00000469054 PDS5AQ29RF7 1337 aaKnown RBP14.65□□□□□ -0.06
VPS13D-204ENST00000469054 F8W031 263 aaPredicted RBP14.64□□□□□ -0.07
VPS13D-204ENST00000469054 MCAMP43121 646 aa14.64□□□□□ -0.07
VPS13D-204ENST00000469054 RBM26Q5T8P6 1007 aaKnown RBP14.64□□□□□ -0.07
VPS13D-204ENST00000469054 TRPM4Q8TD43 1214 aa14.64□□□□□ -0.07
VPS13D-204ENST00000469054 HMG20BQ9P0W2 317 aa14.64□□□□□ -0.07
VPS13D-204ENST00000469054 SUGT1Q9Y2Z0 365 aa14.64□□□□□ -0.07
VPS13D-204ENST00000469054 SALL1Q9NSC2 1324 aa14.64□□□□□ -0.07
VPS13D-204ENST00000469054 COL1A1P02452 1464 aaPredicted RBP14.63□□□□□ -0.07
VPS13D-204ENST00000469054 POTEIP0CG38 1075 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 POTEJP0CG39 1038 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 HIRAP54198 1017 aaPredicted RBP14.63□□□□□ -0.07
VPS13D-204ENST00000469054 SCARF1Q14162 830 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 GRIK5Q16478 980 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 TBC1D10BQ4KMP7 808 aaPredicted RBP14.63□□□□□ -0.07
VPS13D-204ENST00000469054 ANKRD45Q5TZF3 282 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 LDHDQ86WU2 507 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 SMC5Q8IY18 1101 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 ZGPATQ8N5A5 531 aaKnown RBP14.63□□□□□ -0.07
VPS13D-204ENST00000469054 SPATA5Q8NB90 893 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 RBM46Q8TBY0 533 aaKnown RBP14.63□□□□□ -0.07
VPS13D-204ENST00000469054 MYOZ2Q9NPC6 264 aa14.63□□□□□ -0.07
VPS13D-204ENST00000469054 TTF2Q9UNY4 1162 aaKnown RBP14.63□□□□□ -0.07
VPS13D-204ENST00000469054 EGFRP00533 1210 aa14.62□□□□□ -0.07
VPS13D-204ENST00000469054 KIF4BQ2VIQ3 1234 aa14.62□□□□□ -0.07
VPS13D-204ENST00000469054 PI16Q6UXB8 463 aa14.62□□□□□ -0.07
VPS13D-204ENST00000469054 ZBTB47Q9UFB7 747 aaPredicted RBP14.62□□□□□ -0.07
VPS13D-204ENST00000469054 CLEC11AQ9Y240 323 aa14.62□□□□□ -0.07
VPS13D-204ENST00000469054 NEFLP07196 543 aa14.61□□□□□ -0.07
VPS13D-204ENST00000469054 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
VPS13D-204ENST00000469054 SMC1BQ8NDV3 1235 aa14.61□□□□□ -0.07
VPS13D-204ENST00000469054 ZC3H15Q8WU90 426 aaKnown RBP14.61□□□□□ -0.07
VPS13D-204ENST00000469054 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS13D-204ENST00000469054 SNRKQ9NRH2 765 aa14.61□□□□□ -0.07
VPS13D-204ENST00000469054 SCN4AP35499 1836 aa14.61□□□□□ -0.07
VPS13D-204ENST00000469054 WNT10BO00744 389 aa14.6□□□□□ -0.07
VPS13D-204ENST00000469054 LDHBP07195 334 aaKnown RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 317 ms