RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RASAL3Q86YV0 1011 aa20.9■□□□□ 0.94
CCDC28B-204ENST00000469003 APOBEC3FQ8IUX4 373 aaKnown RBP20.9■□□□□ 0.94
CCDC28B-204ENST00000469003 CERS5Q8N5B7 392 aa20.9■□□□□ 0.94
CCDC28B-204ENST00000469003 UBE4AQ14139 1066 aa20.89■□□□□ 0.93
CCDC28B-204ENST00000469003 RABL6Q3YEC7 729 aaPredicted RBP20.89■□□□□ 0.93
CCDC28B-204ENST00000469003 PRAMEF18Q5VWM3 479 aa20.89■□□□□ 0.93
CCDC28B-204ENST00000469003 SAGE1Q9NXZ1 904 aa20.89■□□□□ 0.93
CCDC28B-204ENST00000469003 AKAP11Q9UKA4 1901 aa20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 NF2P35240 595 aa20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 DLGAP5Q15398 846 aa20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 MTMR14Q8NCE2 650 aa20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 PUS3Q9BZE2 481 aaKnown RBP20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 BICC1Q9H694 974 aaKnown RBP20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 ECM29Q5VYK3 1845 aa20.88■□□□□ 0.93
CCDC28B-204ENST00000469003 DGKZQ13574 1117 aa20.87■□□□□ 0.93
CCDC28B-204ENST00000469003 ALDH1L2Q3SY69 923 aa20.87■□□□□ 0.93
CCDC28B-204ENST00000469003 MOB2Q70IA6 237 aa20.87■□□□□ 0.93
CCDC28B-204ENST00000469003 REM2Q8IYK8 340 aaPredicted RBP20.87■□□□□ 0.93
CCDC28B-204ENST00000469003 CDCA7LQ96GN5 454 aa20.87■□□□□ 0.93
CCDC28B-204ENST00000469003 RIPOR2Q9Y4F9 1068 aa20.87■□□□□ 0.93
CCDC28B-204ENST00000469003 MROH5Q6ZUA9 1318 aa20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 UBE2Q2LH0YL09 131 aa20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 TTLL12Q14166 644 aaPredicted RBP20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 ANKRD44Q8N8A2 993 aa20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 CSRNP1Q96S65 589 aa20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 TNRC18O15417 2968 aaPredicted RBP20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 COL1A1P02452 1464 aaPredicted RBP20.86■□□□□ 0.93
CCDC28B-204ENST00000469003 FAM205AQ6ZU69 1335 aa20.85■□□□□ 0.93
CCDC28B-204ENST00000469003 F8W031 263 aaPredicted RBP20.85■□□□□ 0.93
CCDC28B-204ENST00000469003 TRMT2AQ8IZ69 625 aaKnown RBP20.85■□□□□ 0.93
CCDC28B-204ENST00000469003 TDRD7Q8NHU6 1098 aaKnown RBP20.85■□□□□ 0.93
CCDC28B-204ENST00000469003 RNF186Q9NXI6 227 aa20.85■□□□□ 0.93
CCDC28B-204ENST00000469003 HIBADHP31937 336 aaKnown RBP20.84■□□□□ 0.93
CCDC28B-204ENST00000469003 GYG1P46976 350 aa20.84■□□□□ 0.93
CCDC28B-204ENST00000469003 CFAP100Q494V2 611 aa20.84■□□□□ 0.93
CCDC28B-204ENST00000469003 FAM84BQ96KN1 310 aaPredicted RBP20.84■□□□□ 0.93
CCDC28B-204ENST00000469003 USP44Q9H0E7 712 aa20.84■□□□□ 0.93
CCDC28B-204ENST00000469003 JAG2Q9Y219 1238 aa20.84■□□□□ 0.93
CCDC28B-204ENST00000469003 CCER2I3L3R5 266 aa20.83■□□□□ 0.93
CCDC28B-204ENST00000469003 TRPA1O75762 1119 aa20.83■□□□□ 0.93
CCDC28B-204ENST00000469003 ARMC9Q7Z3E5 817 aa20.83■□□□□ 0.93
CCDC28B-204ENST00000469003 SMC4Q9NTJ3 1288 aa20.83■□□□□ 0.93
CCDC28B-204ENST00000469003 PCDHAC2Q9Y5I4 1007 aa20.83■□□□□ 0.93
CCDC28B-204ENST00000469003 ARAP2Q8WZ64 1704 aa20.83■□□□□ 0.92
CCDC28B-204ENST00000469003 SPDYE2BA6NHP3 402 aa20.82■□□□□ 0.92
CCDC28B-204ENST00000469003 MYO1BO43795 1136 aa20.82■□□□□ 0.92
CCDC28B-204ENST00000469003 CT47B1P0C2W7 299 aaPredicted RBP20.82■□□□□ 0.92
CCDC28B-204ENST00000469003 SPDYE6P0CI01 402 aa20.82■□□□□ 0.92
CCDC28B-204ENST00000469003 LRRC24Q50LG9 513 aa20.82■□□□□ 0.92
CCDC28B-204ENST00000469003 DEFB129Q9H1M3 183 aa20.82■□□□□ 0.92
CCDC28B-204ENST00000469003 METTL24Q5JXM2 366 aa20.81■□□□□ 0.92
CCDC28B-204ENST00000469003 MFSD14BQ5SR56 506 aa20.81■□□□□ 0.92
CCDC28B-204ENST00000469003 PRMT6Q96LA8 375 aaPredicted RBP20.81■□□□□ 0.92
CCDC28B-204ENST00000469003 PPP2R3BQ9Y5P8 575 aa20.81■□□□□ 0.92
CCDC28B-204ENST00000469003 PTPN12Q05209 780 aaKnown RBP20.8■□□□□ 0.92
CCDC28B-204ENST00000469003 FBXO33Q7Z6M2 555 aa20.8■□□□□ 0.92
CCDC28B-204ENST00000469003 VGLL2Q8N8G2 317 aa20.8■□□□□ 0.92
CCDC28B-204ENST00000469003 CLRN2A0PK11 232 aa20.79■□□□□ 0.92
CCDC28B-204ENST00000469003 PDE8BO95263 885 aa20.79■□□□□ 0.92
CCDC28B-204ENST00000469003 RBM5P52756 815 aaKnown RBP eCLIP20.79■□□□□ 0.92
CCDC28B-204ENST00000469003 PRKG1Q13976 671 aa20.79■□□□□ 0.92
CCDC28B-204ENST00000469003 LDLRAD1Q5T700 205 aa20.79■□□□□ 0.92
CCDC28B-204ENST00000469003 KLHDC4Q8TBB5 520 aa20.79■□□□□ 0.92
CCDC28B-204ENST00000469003 VPS37DQ86XT2 251 aa20.78■□□□□ 0.92
CCDC28B-204ENST00000469003 VEZTQ9HBM0 779 aa20.78■□□□□ 0.92
CCDC28B-204ENST00000469003 ANGEL1Q9UNK9 670 aaKnown RBP20.78■□□□□ 0.92
CCDC28B-204ENST00000469003 TTF2Q9UNY4 1162 aaKnown RBP20.78■□□□□ 0.92
CCDC28B-204ENST00000469003 AOX1Q06278 1338 aa20.78■□□□□ 0.92
CCDC28B-204ENST00000469003 SSC5DA1L4H1 1573 aa20.77■□□□□ 0.92
CCDC28B-204ENST00000469003 MAP3K11Q16584 847 aa20.77■□□□□ 0.92
CCDC28B-204ENST00000469003 CAVIN4Q5BKX8 364 aa20.77■□□□□ 0.92
CCDC28B-204ENST00000469003 SERPINA10Q9UK55 444 aa20.77■□□□□ 0.92
CCDC28B-204ENST00000469003 TM4SF4P48230 202 aa20.76■□□□□ 0.91
CCDC28B-204ENST00000469003 RFX5P48382 616 aaPredicted RBP20.76■□□□□ 0.91
CCDC28B-204ENST00000469003 PPP1R12BO60237 982 aaPredicted RBP20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 SUPT20HL1Q3ZLR7 823 aa20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 SPDYE2Q495Y8 402 aa20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 TBC1D22AQ8WUA7 517 aa20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 NOB1Q9ULX3 412 aaKnown RBP20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 FZD1Q9UP38 647 aa20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 IQSEC3Q9UPP2 1182 aaPredicted RBP20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 KIF16BQ96L93 1317 aa20.75■□□□□ 0.91
CCDC28B-204ENST00000469003 EYA2O00167 538 aa20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 FRAT2O75474 233 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 FGFR2P21802 821 aa20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 SREBF2Q12772 1141 aa20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 MKRN3Q13064 507 aaKnown RBP20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 CHAF1AQ13111 956 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 TNFAIP1Q13829 316 aa20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 RASA3Q14644 834 aa20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 PUM3Q15397 648 aaKnown RBP20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 SPRYD7Q5W111 196 aa20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 API5Q9BZZ5 524 aaKnown RBP20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 ZNF70Q9UC06 446 aaPredicted RBP20.74■□□□□ 0.91
CCDC28B-204ENST00000469003 UNCXA6NJT0 531 aa20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 IFIT1P09914 478 aaKnown RBP20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 UBTFL1P0CB47 393 aaPredicted RBP20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 CRKP46108 304 aa20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 BCAMP50895 628 aa20.73■□□□□ 0.91
CCDC28B-204ENST00000469003 SOX10P56693 466 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms