RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 ARHGAP45Q92619 1136 aa23.91■■□□□ 1.42
COL7A1-207ENST00000467985 CCDC102AQ96A19 550 aa23.91■■□□□ 1.42
COL7A1-207ENST00000467985 UBTFL1P0CB47 393 aaPredicted RBP23.9■■□□□ 1.42
COL7A1-207ENST00000467985 CERS5Q8N5B7 392 aa23.9■■□□□ 1.42
COL7A1-207ENST00000467985 FAM205AQ6ZU69 1335 aa23.89■■□□□ 1.42
COL7A1-207ENST00000467985 CA12O43570 354 aa23.89■■□□□ 1.41
COL7A1-207ENST00000467985 DLGAP5Q15398 846 aa23.89■■□□□ 1.41
COL7A1-207ENST00000467985 LRRC24Q50LG9 513 aa23.89■■□□□ 1.41
COL7A1-207ENST00000467985 APOBEC3FQ8IUX4 373 aaKnown RBP23.89■■□□□ 1.41
COL7A1-207ENST00000467985 MTMR14Q8NCE2 650 aa23.89■■□□□ 1.41
COL7A1-207ENST00000467985 TDRD7Q8NHU6 1098 aaKnown RBP23.89■■□□□ 1.41
COL7A1-207ENST00000467985 ZBED3Q96IU2 234 aaPredicted RBP23.89■■□□□ 1.41
COL7A1-207ENST00000467985 FAM84BQ96KN1 310 aaPredicted RBP23.89■■□□□ 1.41
COL7A1-207ENST00000467985 PDE8BO95263 885 aa23.88■■□□□ 1.41
COL7A1-207ENST00000467985 GYG1P46976 350 aa23.88■■□□□ 1.41
COL7A1-207ENST00000467985 VPS37DQ86XT2 251 aa23.88■■□□□ 1.41
COL7A1-207ENST00000467985 HSPA8P11142 646 aaKnown RBP23.87■■□□□ 1.41
COL7A1-207ENST00000467985 NF2P35240 595 aa23.87■■□□□ 1.41
COL7A1-207ENST00000467985 ZNF157P51786 506 aaPredicted RBP23.87■■□□□ 1.41
COL7A1-207ENST00000467985 LBX1P52954 281 aa23.87■■□□□ 1.41
COL7A1-207ENST00000467985 CAVIN4Q5BKX8 364 aa23.87■■□□□ 1.41
COL7A1-207ENST00000467985 PAPPA2Q9BXP8 1791 aa23.87■■□□□ 1.41
COL7A1-207ENST00000467985 IPO8O15397 1037 aaKnown RBP23.86■■□□□ 1.41
COL7A1-207ENST00000467985 VGLL2Q8N8G2 317 aa23.86■■□□□ 1.41
COL7A1-207ENST00000467985 MYO1BO43795 1136 aa23.85■■□□□ 1.41
COL7A1-207ENST00000467985 FBXO33Q7Z6M2 555 aa23.85■■□□□ 1.41
COL7A1-207ENST00000467985 KLHDC4Q8TBB5 520 aa23.85■■□□□ 1.41
COL7A1-207ENST00000467985 FBXO3Q9UK99 471 aa23.85■■□□□ 1.41
COL7A1-207ENST00000467985 COL1A1P02452 1464 aaPredicted RBP23.84■■□□□ 1.41
COL7A1-207ENST00000467985 FAM155AB1AL88 458 aaPredicted RBP23.84■■□□□ 1.41
COL7A1-207ENST00000467985 EYA2O00167 538 aa23.84■■□□□ 1.41
COL7A1-207ENST00000467985 RFX5P48382 616 aaPredicted RBP23.84■■□□□ 1.41
COL7A1-207ENST00000467985 HNRNPUQ00839 825 aaKnown RBP eCLIP23.84■■□□□ 1.41
COL7A1-207ENST00000467985 PUM3Q15397 648 aaKnown RBP23.84■■□□□ 1.41
COL7A1-207ENST00000467985 MFSD14BQ5SR56 506 aa23.84■■□□□ 1.41
COL7A1-207ENST00000467985 INTS3Q68E01 1043 aaKnown RBP23.84■■□□□ 1.41
COL7A1-207ENST00000467985 JAG2Q9Y219 1238 aa23.84■■□□□ 1.41
COL7A1-207ENST00000467985 F8W031 263 aaPredicted RBP23.83■■□□□ 1.41
COL7A1-207ENST00000467985 PTPN12Q05209 780 aaKnown RBP23.83■■□□□ 1.41
COL7A1-207ENST00000467985 CFAP100Q494V2 611 aa23.83■■□□□ 1.41
COL7A1-207ENST00000467985 SCAF8Q9UPN6 1271 aaKnown RBP23.83■■□□□ 1.41
COL7A1-207ENST00000467985 ECM29Q5VYK3 1845 aa23.82■■□□□ 1.4
COL7A1-207ENST00000467985 SPDYE2BA6NHP3 402 aa23.82■■□□□ 1.4
COL7A1-207ENST00000467985 FRAT2O75474 233 aaPredicted RBP23.82■■□□□ 1.4
COL7A1-207ENST00000467985 SLC10A3P09131 477 aa23.82■■□□□ 1.4
COL7A1-207ENST00000467985 IFIT1P09914 478 aaKnown RBP23.82■■□□□ 1.4
COL7A1-207ENST00000467985 SPDYE6P0CI01 402 aa23.82■■□□□ 1.4
COL7A1-207ENST00000467985 GNAI3P08754 354 aa23.81■■□□□ 1.4
COL7A1-207ENST00000467985 PRAMEF18Q5VWM3 479 aa23.81■■□□□ 1.4
COL7A1-207ENST00000467985 REM2Q8IYK8 340 aaPredicted RBP23.81■■□□□ 1.4
COL7A1-207ENST00000467985 TBC1D22AQ8WUA7 517 aa23.81■■□□□ 1.4
COL7A1-207ENST00000467985 SERPINA10Q9UK55 444 aa23.81■■□□□ 1.4
COL7A1-207ENST00000467985 PPP2R3BQ9Y5P8 575 aa23.81■■□□□ 1.4
COL7A1-207ENST00000467985 LRRFIP2Q9Y608 721 aaKnown RBP23.81■■□□□ 1.4
COL7A1-207ENST00000467985 ARAP2Q8WZ64 1704 aa23.81■■□□□ 1.4
COL7A1-207ENST00000467985 CIAO1O76071 339 aa23.8■■□□□ 1.4
COL7A1-207ENST00000467985 FGFR2P21802 821 aa23.8■■□□□ 1.4
COL7A1-207ENST00000467985 RBM5P52756 815 aaKnown RBP eCLIP23.8■■□□□ 1.4
COL7A1-207ENST00000467985 TTLL12Q14166 644 aaPredicted RBP23.8■■□□□ 1.4
COL7A1-207ENST00000467985 DEFB129Q9H1M3 183 aa23.8■■□□□ 1.4
COL7A1-207ENST00000467985 TTF2Q9UNY4 1162 aaKnown RBP23.8■■□□□ 1.4
COL7A1-207ENST00000467985 SLC5A1P13866 664 aa23.79■■□□□ 1.4
COL7A1-207ENST00000467985 ATF7IPQ6VMQ6 1270 aa23.79■■□□□ 1.4
COL7A1-207ENST00000467985 LPIN2Q92539 896 aa23.79■■□□□ 1.4
COL7A1-207ENST00000467985 MEIS3Q99687 375 aa23.79■■□□□ 1.4
COL7A1-207ENST00000467985 KIF23Q02241 960 aaPredicted RBP23.78■■□□□ 1.4
COL7A1-207ENST00000467985 ATG9AQ7Z3C6 839 aa23.78■■□□□ 1.4
COL7A1-207ENST00000467985 ARMC9Q7Z3E5 817 aa23.78■■□□□ 1.4
COL7A1-207ENST00000467985 PRMT6Q96LA8 375 aaPredicted RBP23.78■■□□□ 1.4
COL7A1-207ENST00000467985 ZIC5Q96T25 663 aa23.78■■□□□ 1.4
COL7A1-207ENST00000467985 UBE2Q2LH0YL09 131 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 BCAR3O75815 825 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 TRIM27P14373 513 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 BCAMP50895 628 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 RASAL3Q86YV0 1011 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 FRAT1Q92837 279 aaPredicted RBP23.77■■□□□ 1.4
COL7A1-207ENST00000467985 SIL1Q9H173 461 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 CEP126Q9P2H0 1117 aa23.77■■□□□ 1.4
COL7A1-207ENST00000467985 IQSEC3Q9UPP2 1182 aaPredicted RBP23.77■■□□□ 1.4
COL7A1-207ENST00000467985 IL15P40933 162 aaPredicted RBP23.76■■□□□ 1.39
COL7A1-207ENST00000467985 CHAF1AQ13111 956 aaPredicted RBP23.76■■□□□ 1.39
COL7A1-207ENST00000467985 MOB2Q70IA6 237 aa23.76■■□□□ 1.39
COL7A1-207ENST00000467985 SAGE1Q9NXZ1 904 aa23.76■■□□□ 1.39
COL7A1-207ENST00000467985 PCDHAC2Q9Y5I4 1007 aa23.76■■□□□ 1.39
COL7A1-207ENST00000467985 HDLBPQ00341 1268 aaKnown RBP23.75■■□□□ 1.39
COL7A1-207ENST00000467985 TNFAIP1Q13829 316 aa23.75■■□□□ 1.39
COL7A1-207ENST00000467985 VEZTQ9HBM0 779 aa23.75■■□□□ 1.39
COL7A1-207ENST00000467985 COPRSQ9NQ92 184 aa23.75■■□□□ 1.39
COL7A1-207ENST00000467985 SUGT1Q9Y2Z0 365 aa23.75■■□□□ 1.39
COL7A1-207ENST00000467985 CLRN2A0PK11 232 aa23.74■■□□□ 1.39
COL7A1-207ENST00000467985 ATP2B3Q16720 1220 aa23.74■■□□□ 1.39
COL7A1-207ENST00000467985 SUPT20HL1Q3ZLR7 823 aa23.74■■□□□ 1.39
COL7A1-207ENST00000467985 TSKSQ9UJT2 592 aa23.74■■□□□ 1.39
COL7A1-207ENST00000467985 PPP1R12BO60237 982 aaPredicted RBP23.73■■□□□ 1.39
COL7A1-207ENST00000467985 CRKP46108 304 aa23.73■■□□□ 1.39
COL7A1-207ENST00000467985 MTX1Q13505 466 aa23.73■■□□□ 1.39
COL7A1-207ENST00000467985 SPDYE2Q495Y8 402 aa23.73■■□□□ 1.39
COL7A1-207ENST00000467985 ZKSCAN2Q63HK3 967 aa23.73■■□□□ 1.39
COL7A1-207ENST00000467985 DZIP1LQ8IYY4 767 aaKnown RBP23.73■■□□□ 1.39
COL7A1-207ENST00000467985 MRIQ9BWK5 157 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms