RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 PLIN1O60240 522 aa26.17■■□□□ 1.78
COL6A1-203ENST00000466285 PTPN12Q05209 780 aaKnown RBP26.17■■□□□ 1.78
COL6A1-203ENST00000466285 SLC4A10Q6U841 1118 aa26.17■■□□□ 1.78
COL6A1-203ENST00000466285 IL1R1P14778 569 aa26.16■■□□□ 1.78
COL6A1-203ENST00000466285 CLRN2A0PK11 232 aa26.15■■□□□ 1.78
COL6A1-203ENST00000466285 APOBEC3FQ8IUX4 373 aaKnown RBP26.15■■□□□ 1.78
COL6A1-203ENST00000466285 TBC1D8O95759 1140 aa26.14■■□□□ 1.78
COL6A1-203ENST00000466285 NBPF7P0C2Y1 421 aaPredicted RBP26.14■■□□□ 1.78
COL6A1-203ENST00000466285 R3HDMLQ9H3Y0 253 aa26.14■■□□□ 1.78
COL6A1-203ENST00000466285 HDAC9Q9UKV0 1011 aa26.14■■□□□ 1.78
COL6A1-203ENST00000466285 COL1A1P02452 1464 aaPredicted RBP26.14■■□□□ 1.78
COL6A1-203ENST00000466285 MLLT1Q03111 559 aaPredicted RBP26.13■■□□□ 1.77
COL6A1-203ENST00000466285 LDHAL6AQ6ZMR3 332 aa26.13■■□□□ 1.77
COL6A1-203ENST00000466285 SOX10P56693 466 aa26.12■■□□□ 1.77
COL6A1-203ENST00000466285 CCDC57Q2TAC2 916 aa26.12■■□□□ 1.77
COL6A1-203ENST00000466285 CFAP100Q494V2 611 aa26.12■■□□□ 1.77
COL6A1-203ENST00000466285 ZNF804AQ7Z570 1209 aa26.12■■□□□ 1.77
COL6A1-203ENST00000466285 CLMNQ96JQ2 1002 aa26.12■■□□□ 1.77
COL6A1-203ENST00000466285 PRMT6Q96LA8 375 aaPredicted RBP26.12■■□□□ 1.77
COL6A1-203ENST00000466285 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.12■■□□□ 1.77
COL6A1-203ENST00000466285 ANGEL1Q9UNK9 670 aaKnown RBP26.12■■□□□ 1.77
COL6A1-203ENST00000466285 HTTP42858 3142 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 SPDYE2BA6NHP3 402 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 ALDH1L1O75891 902 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 SPDYE6P0CI01 402 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 GYG1P46976 350 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 DLGAP5Q15398 846 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 TAF7LQ5H9L4 462 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 LDLRAD1Q5T700 205 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 SRCIN1Q9C0H9 1055 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 DEFB129Q9H1M3 183 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 CNNM1Q9NRU3 951 aa26.11■■□□□ 1.77
COL6A1-203ENST00000466285 C9orf78Q9NZ63 289 aaPredicted RBP26.11■■□□□ 1.77
COL6A1-203ENST00000466285 GRIK5Q16478 980 aa26.1■■□□□ 1.77
COL6A1-203ENST00000466285 CDAN1Q8IWY9 1227 aa26.1■■□□□ 1.77
COL6A1-203ENST00000466285 MTMR14Q8NCE2 650 aa26.1■■□□□ 1.77
COL6A1-203ENST00000466285 ZNF296Q8WUU4 475 aaPredicted RBP26.1■■□□□ 1.77
COL6A1-203ENST00000466285 NF2P35240 595 aa26.09■■□□□ 1.77
COL6A1-203ENST00000466285 CTU1Q7Z7A3 348 aaKnown RBP26.09■■□□□ 1.77
COL6A1-203ENST00000466285 MRPL50Q8N5N7 158 aaKnown RBP26.09■■□□□ 1.77
COL6A1-203ENST00000466285 ANKRD44Q8N8A2 993 aa26.09■■□□□ 1.77
COL6A1-203ENST00000466285 BICC1Q9H694 974 aaKnown RBP26.09■■□□□ 1.77
COL6A1-203ENST00000466285 UTYO14607 1347 aa26.08■■□□□ 1.77
COL6A1-203ENST00000466285 ZEB1P37275 1124 aaPredicted RBP26.07■■□□□ 1.76
COL6A1-203ENST00000466285 TM4SF4P48230 202 aa26.07■■□□□ 1.76
COL6A1-203ENST00000466285 SPRYD7Q5W111 196 aa26.07■■□□□ 1.76
COL6A1-203ENST00000466285 VEZTQ9HBM0 779 aa26.07■■□□□ 1.76
COL6A1-203ENST00000466285 LRRC24Q50LG9 513 aa26.06■■□□□ 1.76
COL6A1-203ENST00000466285 NBPF12Q5TAG4 269 aaPredicted RBP26.06■■□□□ 1.76
COL6A1-203ENST00000466285 ARMC9Q7Z3E5 817 aa26.06■■□□□ 1.76
COL6A1-203ENST00000466285 REM2Q8IYK8 340 aaPredicted RBP26.06■■□□□ 1.76
COL6A1-203ENST00000466285 TDRD7Q8NHU6 1098 aaKnown RBP26.06■■□□□ 1.76
COL6A1-203ENST00000466285 KLHDC4Q8TBB5 520 aa26.06■■□□□ 1.76
COL6A1-203ENST00000466285 FAM84BQ96KN1 310 aaPredicted RBP26.06■■□□□ 1.76
COL6A1-203ENST00000466285 IQSEC3Q9UPP2 1182 aaPredicted RBP26.06■■□□□ 1.76
COL6A1-203ENST00000466285 FAM205AQ6ZU69 1335 aa26.06■■□□□ 1.76
COL6A1-203ENST00000466285 MYH13Q9UKX3 1938 aa26.06■■□□□ 1.76
COL6A1-203ENST00000466285 MMP14P50281 582 aa26.05■■□□□ 1.76
COL6A1-203ENST00000466285 FKBP1AP62942 108 aaKnown RBP26.05■■□□□ 1.76
COL6A1-203ENST00000466285 RIPOR2Q9Y4F9 1068 aa26.05■■□□□ 1.76
COL6A1-203ENST00000466285 GJA5P36382 358 aa26.04■■□□□ 1.76
COL6A1-203ENST00000466285 RABL6Q3YEC7 729 aaPredicted RBP26.04■■□□□ 1.76
COL6A1-203ENST00000466285 MFSD14BQ5SR56 506 aa26.04■■□□□ 1.76
COL6A1-203ENST00000466285 SSH1Q8WYL5 1049 aa26.03■■□□□ 1.76
COL6A1-203ENST00000466285 HPS5Q9UPZ3 1129 aa26.03■■□□□ 1.76
COL6A1-203ENST00000466285 GPR25O00155 361 aa26.02■■□□□ 1.76
COL6A1-203ENST00000466285 RBM5P52756 815 aaKnown RBP eCLIP26.02■■□□□ 1.76
COL6A1-203ENST00000466285 UBE4AQ14139 1066 aa26.02■■□□□ 1.76
COL6A1-203ENST00000466285 MAP3K11Q16584 847 aa26.02■■□□□ 1.76
COL6A1-203ENST00000466285 VGLL2Q8N8G2 317 aa26.02■■□□□ 1.76
COL6A1-203ENST00000466285 WNK4Q96J92 1243 aa26.02■■□□□ 1.76
COL6A1-203ENST00000466285 PDE4DIPQ5VU43 2346 aa26.02■■□□□ 1.76
COL6A1-203ENST00000466285 IGF2BP3O00425 579 aaKnown RBP eCLIP26.01■■□□□ 1.75
COL6A1-203ENST00000466285 HIBADHP31937 336 aaKnown RBP26.01■■□□□ 1.75
COL6A1-203ENST00000466285 RASA3Q14644 834 aa26.01■■□□□ 1.75
COL6A1-203ENST00000466285 TTF2Q9UNY4 1162 aaKnown RBP26.01■■□□□ 1.75
COL6A1-203ENST00000466285 SPDYE2Q495Y8 402 aa26■■□□□ 1.75
COL6A1-203ENST00000466285 TDRD3Q9H7E2 651 aaKnown RBP26■■□□□ 1.75
COL6A1-203ENST00000466285 PPP2R3BQ9Y5P8 575 aa26■■□□□ 1.75
COL6A1-203ENST00000466285 USP2O75604 605 aaPredicted RBP25.99■■□□□ 1.75
COL6A1-203ENST00000466285 SREBF2Q12772 1141 aa25.99■■□□□ 1.75
COL6A1-203ENST00000466285 CDCA7LQ96GN5 454 aa25.99■■□□□ 1.75
COL6A1-203ENST00000466285 ZNF70Q9UC06 446 aaPredicted RBP25.99■■□□□ 1.75
COL6A1-203ENST00000466285 CHAF1AQ13111 956 aaPredicted RBP25.98■■□□□ 1.75
COL6A1-203ENST00000466285 TEPSINQ96N21 525 aa25.98■■□□□ 1.75
COL6A1-203ENST00000466285 CENPFP49454 3210 aa25.97■■□□□ 1.75
COL6A1-203ENST00000466285 FBXO33Q7Z6M2 555 aa25.97■■□□□ 1.75
COL6A1-203ENST00000466285 CNKSR2Q8WXI2 1034 aa25.97■■□□□ 1.75
COL6A1-203ENST00000466285 CFHR5Q9BXR6 569 aa25.97■■□□□ 1.75
COL6A1-203ENST00000466285 USP44Q9H0E7 712 aa25.97■■□□□ 1.75
COL6A1-203ENST00000466285 ZSWIM8A7E2V4 1837 aa25.97■■□□□ 1.75
COL6A1-203ENST00000466285 MROH5Q6ZUA9 1318 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 MYO1BO43795 1136 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 CRKP46108 304 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 CACNB3P54284 484 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 CAP1Q01518 475 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 METTL24Q5JXM2 366 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 IFNL1Q8IU54 200 aa25.96■■□□□ 1.75
COL6A1-203ENST00000466285 DZIP1LQ8IYY4 767 aaKnown RBP25.96■■□□□ 1.75
COL6A1-203ENST00000466285 SLC10A4Q96EP9 437 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 199.6 ms