RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 ATG9AQ7Z3C6 839 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 OGFOD1Q8N543 542 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 TRPM4Q8TD43 1214 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 FBXW7Q969H0 707 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 FAM84BQ96KN1 310 aaPredicted RBP16.22■□□□□ 0.19
COL28A1-206ENST00000465339 CEP126Q9P2H0 1117 aa16.22■□□□□ 0.19
COL28A1-206ENST00000465339 POLR2AP24928 1970 aaKnown RBP16.21■□□□□ 0.19
COL28A1-206ENST00000465339 IFIT1P09914 478 aaKnown RBP16.21■□□□□ 0.19
COL28A1-206ENST00000465339 FKBP1AP62942 108 aaKnown RBP16.21■□□□□ 0.19
COL28A1-206ENST00000465339 PUM3Q15397 648 aaKnown RBP16.21■□□□□ 0.19
COL28A1-206ENST00000465339 RBM26Q5T8P6 1007 aaKnown RBP16.21■□□□□ 0.19
COL28A1-206ENST00000465339 TDRD7Q8NHU6 1098 aaKnown RBP16.21■□□□□ 0.19
COL28A1-206ENST00000465339 SIL1Q9H173 461 aa16.21■□□□□ 0.19
COL28A1-206ENST00000465339 CREBZFQ9NS37 354 aa16.21■□□□□ 0.19
COL28A1-206ENST00000465339 FGFR2P21802 821 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 GYG1P46976 350 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 KIF4BQ2VIQ3 1234 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 CDC37L1Q7L3B6 337 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 FBXO33Q7Z6M2 555 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 VPS37DQ86XT2 251 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 LPIN2Q92539 896 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 TRPM7Q96QT4 1865 aa16.2■□□□□ 0.18
COL28A1-206ENST00000465339 SLC5A1P13866 664 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 DNAJC5GQ8N7S2 189 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.19■□□□□ 0.18
COL28A1-206ENST00000465339 PANK1Q8TE04 598 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 MXD3Q9BW11 206 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 MYOZ2Q9NPC6 264 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 HDAC9Q9UKV0 1011 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 PA2G4Q9UQ80 394 aaKnown RBP16.19■□□□□ 0.18
COL28A1-206ENST00000465339 FAM205AQ6ZU69 1335 aa16.19■□□□□ 0.18
COL28A1-206ENST00000465339 TMEM88BA6NKF7 163 aa16.18■□□□□ 0.18
COL28A1-206ENST00000465339 EGFRP00533 1210 aa16.18■□□□□ 0.18
COL28A1-206ENST00000465339 ATP8B2P98198 1209 aa16.18■□□□□ 0.18
COL28A1-206ENST00000465339 DCPSQ96C86 337 aaKnown RBP16.18■□□□□ 0.18
COL28A1-206ENST00000465339 PNMA6EA0A0J9YXQ4 647 aa16.17■□□□□ 0.18
COL28A1-206ENST00000465339 HTRA3P83110 453 aa16.17■□□□□ 0.18
COL28A1-206ENST00000465339 ATP2B3Q16720 1220 aa16.17■□□□□ 0.18
COL28A1-206ENST00000465339 KIAA0825Q8IV33 1275 aa16.17■□□□□ 0.18
COL28A1-206ENST00000465339 CHMP4BQ9H444 224 aaKnown RBP16.17■□□□□ 0.18
COL28A1-206ENST00000465339 FRAT2O75474 233 aaPredicted RBP16.16■□□□□ 0.18
COL28A1-206ENST00000465339 SCARF1Q14162 830 aa16.16■□□□□ 0.18
COL28A1-206ENST00000465339 PDE3AQ14432 1141 aa16.16■□□□□ 0.18
COL28A1-206ENST00000465339 MVPQ14764 893 aaKnown RBP16.16■□□□□ 0.18
COL28A1-206ENST00000465339 CERS5Q8N5B7 392 aa16.16■□□□□ 0.18
COL28A1-206ENST00000465339 SSH3Q8TE77 659 aa16.16■□□□□ 0.18
COL28A1-206ENST00000465339 GLIS2Q9BZE0 524 aaPredicted RBP16.16■□□□□ 0.18
COL28A1-206ENST00000465339 DDX19BQ9UMR2 479 aa16.16■□□□□ 0.18
COL28A1-206ENST00000465339 AKAP2Q9Y2D5 859 aa16.16■□□□□ 0.18
COL28A1-206ENST00000465339 BCAMP50895 628 aa16.15■□□□□ 0.18
COL28A1-206ENST00000465339 G3BP1Q13283 466 aaKnown RBP eCLIP16.15■□□□□ 0.18
COL28A1-206ENST00000465339 KRT26Q7Z3Y9 468 aa16.15■□□□□ 0.18
COL28A1-206ENST00000465339 USP48Q86UV5 1035 aa16.15■□□□□ 0.18
COL28A1-206ENST00000465339 KLRG1Q96E93 195 aa16.15■□□□□ 0.18
COL28A1-206ENST00000465339 MYH13Q9UKX3 1938 aa16.15■□□□□ 0.18
COL28A1-206ENST00000465339 CEP350Q5VT06 3117 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 TRAF5O00463 557 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 MFSD14BQ5SR56 506 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 SULF1Q8IWU6 871 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 TBC1D22AQ8WUA7 517 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 YTHDC1Q96MU7 727 aaKnown RBP16.14■□□□□ 0.17
COL28A1-206ENST00000465339 C1orf115Q9H7X2 142 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 GNL3LQ9NVN8 582 aaKnown RBP16.14■□□□□ 0.17
COL28A1-206ENST00000465339 GGA3Q9NZ52 723 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 PITPNM2Q9BZ72 1349 aa16.14■□□□□ 0.17
COL28A1-206ENST00000465339 WNT10BO00744 389 aa16.13■□□□□ 0.17
COL28A1-206ENST00000465339 FMR1Q06787 632 aaKnown RBP eCLIP16.13■□□□□ 0.17
COL28A1-206ENST00000465339 TFCP2Q12800 502 aa16.13■□□□□ 0.17
COL28A1-206ENST00000465339 ANGEL2Q5VTE6 544 aaKnown RBP16.13■□□□□ 0.17
COL28A1-206ENST00000465339 CST9Q5W186 159 aa16.13■□□□□ 0.17
COL28A1-206ENST00000465339 MTMR14Q8NCE2 650 aa16.13■□□□□ 0.17
COL28A1-206ENST00000465339 IQSEC3Q9UPP2 1182 aaPredicted RBP16.13■□□□□ 0.17
COL28A1-206ENST00000465339 JAG2Q9Y219 1238 aa16.13■□□□□ 0.17
COL28A1-206ENST00000465339 COG6Q9Y2V7 657 aa16.13■□□□□ 0.17
COL28A1-206ENST00000465339 TIMM10P62072 90 aa16.12■□□□□ 0.17
COL28A1-206ENST00000465339 DLGAP5Q15398 846 aa16.12■□□□□ 0.17
COL28A1-206ENST00000465339 NBPF9Q3BBW0 867 aa16.12■□□□□ 0.17
COL28A1-206ENST00000465339 ZBED3Q96IU2 234 aaPredicted RBP16.12■□□□□ 0.17
COL28A1-206ENST00000465339 ARAP2Q8WZ64 1704 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 ECM29Q5VYK3 1845 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 A0A1B0GUL7 405 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 F8W031 263 aaPredicted RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 SEMA3EO15041 775 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 SURF6O75683 361 aaKnown RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 CELF2O95319 508 aaKnown RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 CHAF1AQ13111 956 aaPredicted RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 CEP85Q6P2H3 762 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 RPAP2Q8IXW5 612 aaPredicted RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 WDR66Q8TBY9 1149 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 ZBTB40Q9NUA8 1239 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 NOP58Q9Y2X3 529 aaKnown RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 SUGT1Q9Y2Z0 365 aa16.11■□□□□ 0.17
COL28A1-206ENST00000465339 ASTN2O75129 1339 aaPredicted RBP16.11■□□□□ 0.17
COL28A1-206ENST00000465339 OS9Q13438 667 aaPredicted RBP16.1■□□□□ 0.17
COL28A1-206ENST00000465339 DEFB115Q30KQ5 88 aa16.1■□□□□ 0.17
COL28A1-206ENST00000465339 GPR108Q9NPR9 543 aa16.1■□□□□ 0.17
COL28A1-206ENST00000465339 ABT1Q9ULW3 272 aaKnown RBP16.1■□□□□ 0.17
COL28A1-206ENST00000465339 TTF2Q9UNY4 1162 aaKnown RBP16.1■□□□□ 0.17
COL28A1-206ENST00000465339 RASSF10A6NK89 507 aa16.09■□□□□ 0.17
COL28A1-206ENST00000465339 ADM5C9JUS6 153 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms