RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 SMC4Q9NTJ3 1288 aa23.73■■□□□ 1.39
SF3A1-205ENST00000463818 JAG2Q9Y219 1238 aa23.73■■□□□ 1.39
SF3A1-205ENST00000463818 F8W031 263 aaPredicted RBP23.72■■□□□ 1.39
SF3A1-205ENST00000463818 UBE2Q2LH0YL09 131 aa23.72■■□□□ 1.39
SF3A1-205ENST00000463818 SLC10A3P09131 477 aa23.72■■□□□ 1.39
SF3A1-205ENST00000463818 DLGAP5Q15398 846 aa23.72■■□□□ 1.39
SF3A1-205ENST00000463818 HIBADHP31937 336 aaKnown RBP23.71■■□□□ 1.39
SF3A1-205ENST00000463818 GYG1P46976 350 aa23.71■■□□□ 1.39
SF3A1-205ENST00000463818 FKBP1AP62942 108 aaKnown RBP23.71■■□□□ 1.39
SF3A1-205ENST00000463818 LRRC24Q50LG9 513 aa23.71■■□□□ 1.39
SF3A1-205ENST00000463818 FAM84BQ96KN1 310 aaPredicted RBP23.71■■□□□ 1.39
SF3A1-205ENST00000463818 MROH5Q6ZUA9 1318 aa23.7■■□□□ 1.38
SF3A1-205ENST00000463818 TTLL12Q14166 644 aaPredicted RBP23.7■■□□□ 1.38
SF3A1-205ENST00000463818 APOBEC3FQ8IUX4 373 aaKnown RBP23.7■■□□□ 1.38
SF3A1-205ENST00000463818 MTMR14Q8NCE2 650 aa23.7■■□□□ 1.38
SF3A1-205ENST00000463818 TDRD7Q8NHU6 1098 aaKnown RBP23.7■■□□□ 1.38
SF3A1-205ENST00000463818 CSRNP1Q96S65 589 aa23.7■■□□□ 1.38
SF3A1-205ENST00000463818 NF2P35240 595 aa23.69■■□□□ 1.38
SF3A1-205ENST00000463818 RASAL3Q86YV0 1011 aa23.69■■□□□ 1.38
SF3A1-205ENST00000463818 PCDHAC2Q9Y5I4 1007 aa23.69■■□□□ 1.38
SF3A1-205ENST00000463818 FAM205AQ6ZU69 1335 aa23.68■■□□□ 1.38
SF3A1-205ENST00000463818 CT47B1P0C2W7 299 aaPredicted RBP23.68■■□□□ 1.38
SF3A1-205ENST00000463818 CFAP100Q494V2 611 aa23.68■■□□□ 1.38
SF3A1-205ENST00000463818 METTL24Q5JXM2 366 aa23.68■■□□□ 1.38
SF3A1-205ENST00000463818 KLHDC4Q8TBB5 520 aa23.68■■□□□ 1.38
SF3A1-205ENST00000463818 NOB1Q9ULX3 412 aaKnown RBP23.68■■□□□ 1.38
SF3A1-205ENST00000463818 PRMT6Q96LA8 375 aaPredicted RBP23.67■■□□□ 1.38
SF3A1-205ENST00000463818 FBXO33Q7Z6M2 555 aa23.66■■□□□ 1.38
SF3A1-205ENST00000463818 ABHD8Q96I13 439 aa23.66■■□□□ 1.38
SF3A1-205ENST00000463818 DEFB129Q9H1M3 183 aa23.66■■□□□ 1.38
SF3A1-205ENST00000463818 RNF186Q9NXI6 227 aa23.66■■□□□ 1.38
SF3A1-205ENST00000463818 TRPA1O75762 1119 aa23.65■■□□□ 1.38
SF3A1-205ENST00000463818 PDE8BO95263 885 aa23.65■■□□□ 1.38
SF3A1-205ENST00000463818 RBM5P52756 815 aaKnown RBP eCLIP23.65■■□□□ 1.38
SF3A1-205ENST00000463818 PRKG1Q13976 671 aa23.65■■□□□ 1.38
SF3A1-205ENST00000463818 MFSD14BQ5SR56 506 aa23.65■■□□□ 1.38
SF3A1-205ENST00000463818 SAGE1Q9NXZ1 904 aa23.65■■□□□ 1.38
SF3A1-205ENST00000463818 ZNF646O15015 1829 aaPredicted RBP23.65■■□□□ 1.38
SF3A1-205ENST00000463818 SPDYE2BA6NHP3 402 aa23.64■■□□□ 1.37
SF3A1-205ENST00000463818 MYO1BO43795 1136 aa23.64■■□□□ 1.37
SF3A1-205ENST00000463818 SPDYE6P0CI01 402 aa23.64■■□□□ 1.37
SF3A1-205ENST00000463818 ARMC9Q7Z3E5 817 aa23.64■■□□□ 1.37
SF3A1-205ENST00000463818 VPS37DQ86XT2 251 aa23.64■■□□□ 1.37
SF3A1-205ENST00000463818 REM2Q8IYK8 340 aaPredicted RBP23.64■■□□□ 1.37
SF3A1-205ENST00000463818 CLRN2A0PK11 232 aa23.63■■□□□ 1.37
SF3A1-205ENST00000463818 PTPN12Q05209 780 aaKnown RBP23.63■■□□□ 1.37
SF3A1-205ENST00000463818 VGLL2Q8N8G2 317 aa23.63■■□□□ 1.37
SF3A1-205ENST00000463818 API5Q9BZZ5 524 aaKnown RBP23.63■■□□□ 1.37
SF3A1-205ENST00000463818 RFX5P48382 616 aaPredicted RBP23.62■■□□□ 1.37
SF3A1-205ENST00000463818 CAVIN4Q5BKX8 364 aa23.62■■□□□ 1.37
SF3A1-205ENST00000463818 VEZTQ9HBM0 779 aa23.62■■□□□ 1.37
SF3A1-205ENST00000463818 TTF2Q9UNY4 1162 aaKnown RBP23.62■■□□□ 1.37
SF3A1-205ENST00000463818 IQSEC3Q9UPP2 1182 aaPredicted RBP23.62■■□□□ 1.37
SF3A1-205ENST00000463818 AOX1Q06278 1338 aa23.61■■□□□ 1.37
SF3A1-205ENST00000463818 UBTFL1P0CB47 393 aaPredicted RBP23.61■■□□□ 1.37
SF3A1-205ENST00000463818 RARSP54136 660 aaKnown RBP23.61■■□□□ 1.37
SF3A1-205ENST00000463818 ANGEL1Q9UNK9 670 aaKnown RBP23.61■■□□□ 1.37
SF3A1-205ENST00000463818 PAPPA2Q9BXP8 1791 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 EYA2O00167 538 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 FRAT2O75474 233 aaPredicted RBP23.6■■□□□ 1.37
SF3A1-205ENST00000463818 BCAMP50895 628 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 CHAF1AQ13111 956 aaPredicted RBP23.6■■□□□ 1.37
SF3A1-205ENST00000463818 LDLRAD1Q5T700 205 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 SERPINA10Q9UK55 444 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 FZD1Q9UP38 647 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 PPP2R3BQ9Y5P8 575 aa23.6■■□□□ 1.37
SF3A1-205ENST00000463818 MCOLN1Q9GZU1 580 aa23.59■■□□□ 1.37
SF3A1-205ENST00000463818 IFIT1P09914 478 aaKnown RBP23.58■■□□□ 1.37
SF3A1-205ENST00000463818 FGFR2P21802 821 aa23.58■■□□□ 1.37
SF3A1-205ENST00000463818 MKRN3Q13064 507 aaKnown RBP23.58■■□□□ 1.37
SF3A1-205ENST00000463818 GRIK5Q16478 980 aa23.58■■□□□ 1.37
SF3A1-205ENST00000463818 SUPT20HL1Q3ZLR7 823 aa23.58■■□□□ 1.37
SF3A1-205ENST00000463818 PPP1R12BO60237 982 aaPredicted RBP23.57■■□□□ 1.36
SF3A1-205ENST00000463818 DGKZQ13574 1117 aa23.57■■□□□ 1.36
SF3A1-205ENST00000463818 RASA3Q14644 834 aa23.57■■□□□ 1.36
SF3A1-205ENST00000463818 PUM3Q15397 648 aaKnown RBP23.57■■□□□ 1.36
SF3A1-205ENST00000463818 NBPF12Q5TAG4 269 aaPredicted RBP23.57■■□□□ 1.36
SF3A1-205ENST00000463818 DZIP1LQ8IYY4 767 aaKnown RBP23.57■■□□□ 1.36
SF3A1-205ENST00000463818 TDRD3Q9H7E2 651 aaKnown RBP23.57■■□□□ 1.36
SF3A1-205ENST00000463818 ZNF70Q9UC06 446 aaPredicted RBP23.57■■□□□ 1.36
SF3A1-205ENST00000463818 A0A1B0GUL6 1792 aa23.57■■□□□ 1.36
SF3A1-205ENST00000463818 CRKP46108 304 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 TM4SF4P48230 202 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 SPDYE2Q495Y8 402 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 ATG9AQ7Z3C6 839 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 TBC1D22AQ8WUA7 517 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 SLC10A4Q96EP9 437 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 HDAC5Q9UQL6 1122 aa23.56■■□□□ 1.36
SF3A1-205ENST00000463818 COL1A1P02452 1464 aaPredicted RBP23.56■■□□□ 1.36
SF3A1-205ENST00000463818 CCDC85CA6NKD9 419 aa23.55■■□□□ 1.36
SF3A1-205ENST00000463818 MAP3K11Q16584 847 aa23.55■■□□□ 1.36
SF3A1-205ENST00000463818 LPIN2Q92539 896 aa23.55■■□□□ 1.36
SF3A1-205ENST00000463818 ARHGAP45Q92619 1136 aa23.55■■□□□ 1.36
SF3A1-205ENST00000463818 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.55■■□□□ 1.36
SF3A1-205ENST00000463818 LRRFIP2Q9Y608 721 aaKnown RBP23.55■■□□□ 1.36
SF3A1-205ENST00000463818 CASP8AP2Q9UKL3 1982 aa23.54■■□□□ 1.36
SF3A1-205ENST00000463818 SLC5A1P13866 664 aa23.54■■□□□ 1.36
SF3A1-205ENST00000463818 SPRYD7Q5W111 196 aa23.54■■□□□ 1.36
SF3A1-205ENST00000463818 SIL1Q9H173 461 aa23.54■■□□□ 1.36
SF3A1-205ENST00000463818 KIF16BQ96L93 1317 aa23.54■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms