RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 LRRCC1Q9C099 1032 aa24.32■■□□□ 1.48
COL9A3-204ENST00000463487 ZBTB47Q9UFB7 747 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-204ENST00000463487 CNOT7Q9UIV1 285 aaKnown RBP24.32■■□□□ 1.48
COL9A3-204ENST00000463487 FAM205AQ6ZU69 1335 aa24.32■■□□□ 1.48
COL9A3-204ENST00000463487 ADORA1P30542 326 aa24.31■■□□□ 1.48
COL9A3-204ENST00000463487 HDAC1Q13547 482 aaPredicted RBP24.31■■□□□ 1.48
COL9A3-204ENST00000463487 MICALL2Q8IY33 904 aa24.31■■□□□ 1.48
COL9A3-204ENST00000463487 RWDD1Q9H446 243 aaPredicted RBP24.31■■□□□ 1.48
COL9A3-204ENST00000463487 TAF1DQ9H5J8 278 aaPredicted RBP24.31■■□□□ 1.48
COL9A3-204ENST00000463487 DCTPP1Q9H773 170 aa24.31■■□□□ 1.48
COL9A3-204ENST00000463487 ADARB2Q9NS39 739 aaKnown RBP24.31■■□□□ 1.48
COL9A3-204ENST00000463487 HDAC9Q9UKV0 1011 aa24.31■■□□□ 1.48
COL9A3-204ENST00000463487 DENND2AQ9ULE3 1009 aa24.31■■□□□ 1.48
COL9A3-204ENST00000463487 IQSEC3Q9UPP2 1182 aaPredicted RBP24.31■■□□□ 1.48
COL9A3-204ENST00000463487 ZBTB22O15209 634 aa24.3■■□□□ 1.48
COL9A3-204ENST00000463487 USP17L8P0C7I0 530 aa24.3■■□□□ 1.48
COL9A3-204ENST00000463487 UQCRFS1P1P0C7P4 283 aa24.3■■□□□ 1.48
COL9A3-204ENST00000463487 PHKA1P46020 1223 aa24.3■■□□□ 1.48
COL9A3-204ENST00000463487 CHAF1AQ13111 956 aaPredicted RBP24.3■■□□□ 1.48
COL9A3-204ENST00000463487 AACSQ86V21 672 aa24.3■■□□□ 1.48
COL9A3-204ENST00000463487 POTECB2RU33 542 aa24.29■■□□□ 1.48
COL9A3-204ENST00000463487 KIF3CO14782 793 aa24.29■■□□□ 1.48
COL9A3-204ENST00000463487 NEFLP07196 543 aa24.29■■□□□ 1.48
COL9A3-204ENST00000463487 IFIT2P09913 472 aaKnown RBP24.29■■□□□ 1.48
COL9A3-204ENST00000463487 MFSD14BQ5SR56 506 aa24.29■■□□□ 1.48
COL9A3-204ENST00000463487 USP50Q70EL3 339 aaPredicted RBP24.29■■□□□ 1.48
COL9A3-204ENST00000463487 WDR66Q8TBY9 1149 aa24.29■■□□□ 1.48
COL9A3-204ENST00000463487 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.29■■□□□ 1.48
COL9A3-204ENST00000463487 MYH13Q9UKX3 1938 aa24.29■■□□□ 1.48
COL9A3-204ENST00000463487 EPS15P42566 896 aa24.28■■□□□ 1.48
COL9A3-204ENST00000463487 EAPPQ56P03 285 aaPredicted RBP24.28■■□□□ 1.48
COL9A3-204ENST00000463487 TTC39AQ5SRH9 613 aa24.28■■□□□ 1.48
COL9A3-204ENST00000463487 GCC1Q96CN9 775 aa24.28■■□□□ 1.48
COL9A3-204ENST00000463487 IL1RAPL2Q9NP60 686 aa24.28■■□□□ 1.48
COL9A3-204ENST00000463487 TOMM70O94826 608 aa24.27■■□□□ 1.48
COL9A3-204ENST00000463487 ZGPATQ8N5A5 531 aaKnown RBP24.27■■□□□ 1.48
COL9A3-204ENST00000463487 EAF2Q96CJ1 260 aaPredicted RBP24.27■■□□□ 1.48
COL9A3-204ENST00000463487 GMLQ99445 158 aa24.27■■□□□ 1.48
COL9A3-204ENST00000463487 PDS5AQ29RF7 1337 aaKnown RBP24.27■■□□□ 1.48
COL9A3-204ENST00000463487 KIAA0825Q8IV33 1275 aa24.26■■□□□ 1.47
COL9A3-204ENST00000463487 DBNDD2Q9BQY9 259 aa24.26■■□□□ 1.47
COL9A3-204ENST00000463487 JAG2Q9Y219 1238 aa24.26■■□□□ 1.47
COL9A3-204ENST00000463487 SUGT1Q9Y2Z0 365 aa24.26■■□□□ 1.47
COL9A3-204ENST00000463487 ARID4AP29374 1257 aaPredicted RBP24.25■■□□□ 1.47
COL9A3-204ENST00000463487 LDHDQ86WU2 507 aa24.25■■□□□ 1.47
COL9A3-204ENST00000463487 CCDC8Q9H0W5 538 aaPredicted RBP24.25■■□□□ 1.47
COL9A3-204ENST00000463487 BCL11AQ9H165 835 aa24.25■■□□□ 1.47
COL9A3-204ENST00000463487 MAST3O60307 1309 aa24.25■■□□□ 1.47
COL9A3-204ENST00000463487 ZNF280AP59817 542 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-204ENST00000463487 RASGRF1Q13972 1273 aa24.24■■□□□ 1.47
COL9A3-204ENST00000463487 RBM46Q8TBY0 533 aaKnown RBP24.24■■□□□ 1.47
COL9A3-204ENST00000463487 ZNF512BQ96KM6 892 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-204ENST00000463487 MXD3Q9BW11 206 aa24.24■■□□□ 1.47
COL9A3-204ENST00000463487 DBNLQ9UJU6 430 aaKnown RBP24.24■■□□□ 1.47
COL9A3-204ENST00000463487 CLEC11AQ9Y240 323 aa24.24■■□□□ 1.47
COL9A3-204ENST00000463487 ZNF646O15015 1829 aaPredicted RBP24.24■■□□□ 1.47
COL9A3-204ENST00000463487 KIF4BQ2VIQ3 1234 aa24.23■■□□□ 1.47
COL9A3-204ENST00000463487 SMC1BQ8NDV3 1235 aa24.23■■□□□ 1.47
COL9A3-204ENST00000463487 MYOZ2Q9NPC6 264 aa24.23■■□□□ 1.47
COL9A3-204ENST00000463487 SALL1Q9NSC2 1324 aa24.22■■□□□ 1.47
COL9A3-204ENST00000463487 CERS5Q8N5B7 392 aa24.22■■□□□ 1.47
COL9A3-204ENST00000463487 SPATA5Q8NB90 893 aa24.22■■□□□ 1.47
COL9A3-204ENST00000463487 GPATCH3Q96I76 525 aa24.22■■□□□ 1.47
COL9A3-204ENST00000463487 TBC1D10BQ4KMP7 808 aaPredicted RBP24.21■■□□□ 1.47
COL9A3-204ENST00000463487 SPTY2D1Q68D10 685 aaPredicted RBP24.21■■□□□ 1.47
COL9A3-204ENST00000463487 ZC3H15Q8WU90 426 aaKnown RBP24.21■■□□□ 1.47
COL9A3-204ENST00000463487 TLR7Q9NYK1 1049 aaKnown RBP24.21■■□□□ 1.47
COL9A3-204ENST00000463487 TTF2Q9UNY4 1162 aaKnown RBP24.21■■□□□ 1.47
COL9A3-204ENST00000463487 F8W031 263 aaPredicted RBP24.2■■□□□ 1.46
COL9A3-204ENST00000463487 RBM26Q5T8P6 1007 aaKnown RBP24.2■■□□□ 1.46
COL9A3-204ENST00000463487 SAMD7Q7Z3H4 446 aa24.2■■□□□ 1.46
COL9A3-204ENST00000463487 COL1A1P02452 1464 aaPredicted RBP24.19■■□□□ 1.46
COL9A3-204ENST00000463487 SHTN1A0MZ66 631 aa24.19■■□□□ 1.46
COL9A3-204ENST00000463487 LDHBP07195 334 aaKnown RBP24.19■■□□□ 1.46
COL9A3-204ENST00000463487 FSTL1Q12841 308 aa24.19■■□□□ 1.46
COL9A3-204ENST00000463487 CHADLQ6NUI6 762 aa24.19■■□□□ 1.46
COL9A3-204ENST00000463487 HMG20BQ9P0W2 317 aa24.19■■□□□ 1.46
COL9A3-204ENST00000463487 SMARCA5O60264 1052 aaPredicted RBP24.18■■□□□ 1.46
COL9A3-204ENST00000463487 DLGAP5Q15398 846 aa24.18■■□□□ 1.46
COL9A3-204ENST00000463487 TRPM4Q8TD43 1214 aa24.18■■□□□ 1.46
COL9A3-204ENST00000463487 ABCF2Q9UG63 623 aa24.18■■□□□ 1.46
COL9A3-204ENST00000463487 SERPINA10Q9UK55 444 aa24.18■■□□□ 1.46
COL9A3-204ENST00000463487 MYO1BO43795 1136 aa24.17■■□□□ 1.46
COL9A3-204ENST00000463487 MCAMP43121 646 aa24.17■■□□□ 1.46
COL9A3-204ENST00000463487 RBM5P52756 815 aaKnown RBP eCLIP24.17■■□□□ 1.465e-10■□□□□ 10.7
COL9A3-204ENST00000463487 HDLBPQ00341 1268 aaKnown RBP24.17■■□□□ 1.46
COL9A3-204ENST00000463487 ANKRD45Q5TZF3 282 aa24.17■■□□□ 1.46
COL9A3-204ENST00000463487 SLF2Q8IX21 1173 aa24.17■■□□□ 1.46
COL9A3-204ENST00000463487 SMC5Q8IY18 1101 aa24.16■■□□□ 1.46
COL9A3-204ENST00000463487 MTMR14Q8NCE2 650 aa24.16■■□□□ 1.46
COL9A3-204ENST00000463487 TEKT1Q969V4 418 aa24.16■■□□□ 1.46
COL9A3-204ENST00000463487 IGSF3O75054 1194 aa24.15■■□□□ 1.46
COL9A3-204ENST00000463487 ERICH6Q7L0X2 663 aa24.15■■□□□ 1.46
COL9A3-204ENST00000463487 DZIP1Q86YF9 867 aaKnown RBP24.15■■□□□ 1.46
COL9A3-204ENST00000463487 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.15■■□□□ 1.46
COL9A3-204ENST00000463487 DCPSQ96C86 337 aaKnown RBP24.15■■□□□ 1.46
COL9A3-204ENST00000463487 MRIQ9BWK5 157 aa24.15■■□□□ 1.46
COL9A3-204ENST00000463487 ADAMTSL1Q8N6G6 1762 aa24.14■■□□□ 1.46
COL9A3-204ENST00000463487 IGHDP01880 384 aa24.14■■□□□ 1.45
COL9A3-204ENST00000463487 POTEIP0CG38 1075 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms