RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	TMEM266	Q2M3C6	531 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	KRT27	Q7Z3Y8	459 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	SPATA5	Q8NB90	893 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	TSPY3	P0CV98	308 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	TSPY8	P0CW00	308 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	BARGIN	Q6ZT62	677 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	HELB	Q8NG08	1087 aa	Predicted RBP	13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	KCNG4	Q8TDN1	519 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	SMARCE1	Q969G3	411 aa		13.64	□□□□□ -0.23
RBM39-223	ENST00000463004	APBA3	O96018	575 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	RPS6KB1	P23443	525 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	VPS72	Q15906	364 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	NKX1-1	Q15270	411 aa	Predicted RBP	13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	NLRP10	Q86W26	655 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	UFL1	O94874	794 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	KRT18	P05783	430 aa	Known RBP	13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	CCDC96	Q2M329	555 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	EAF2	Q96CJ1	260 aa	Predicted RBP	13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	GTPBP4	Q9BZE4	634 aa	Known RBP	13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	LEMD3	Q9Y2U8	911 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	RPS6KA4	O75676	772 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	PDE8B	O95263	885 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	BRAP	Q7Z569	592 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	MICU3	Q86XE3	530 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	GRPEL1	Q9HAV7	217 aa		13.63	□□□□□ -0.23
RBM39-223	ENST00000463004	C3	P01024	1663 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	SLC27A2	O14975	620 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	AK2	P54819	239 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	CCT2	P78371	535 aa	Known RBP	13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	LRRC27	Q9C0I9	530 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	KIF20A	O95235	890 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	TXLNB	Q8N3L3	684 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	JDP2	Q8WYK2	163 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	COL3A1	P02461	1466 aa	Predicted RBP	13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	WDHD1	O75717	1129 aa	Predicted RBP	13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	MBD4	O95243	580 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	UBE3C	Q15386	1083 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	FERMT3	Q86UX7	667 aa		13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	ZNF594	Q96JF6	807 aa	Predicted RBP	13.62	□□□□□ -0.23
RBM39-223	ENST00000463004	RXRB	P28702	533 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	CCDC70	Q6NSX1	233 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	KNDC1	Q76NI1	1749 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	GPAA1	O43292	621 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	ZNF76	P36508	570 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	CERK	Q8TCT0	537 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	RAB3GAP1	Q15042	981 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	RFX7	Q2KHR2	1363 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	KLHDC4	Q8TBB5	520 aa		13.61	□□□□□ -0.23
RBM39-223	ENST00000463004	EPS15	P42566	896 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	TNNI2	P48788	182 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	SLC27A3	Q5K4L6	730 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	CNKSR1	Q969H4	720 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	HOOK2	Q96ED9	719 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	ALG1	Q9BT22	464 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	SLC26A6	Q9BXS9	759 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	SNX14	Q9Y5W7	946 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	BBOX1	O75936	387 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	F13A1	P00488	732 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	NAP1L4	Q99733	375 aa	Known RBP	13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	MCM9	Q9NXL9	1143 aa		13.6	□□□□□ -0.23
RBM39-223	ENST00000463004	UVSSA	Q2YD98	709 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	DPP8	Q6V1X1	898 aa	Predicted RBP	13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	GSPT1	P15170	499 aa	Known RBP	13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	CC2D2B	Q6DHV5	1058 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	SEPT12	Q8IYM1	358 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	GLT8D2	Q9H1C3	349 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	SH2D4A	Q9H788	454 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	ABCC12	Q96J65	1359 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	AMPD3	Q01432	767 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	RNF214	Q8ND24	703 aa		13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.59	□□□□□ -0.23
RBM39-223	ENST00000463004	FGFR1OP	O95684	399 aa	Known RBP	13.58	□□□□□ -0.23
RBM39-223	ENST00000463004	LZTS2	Q9BRK4	669 aa		13.58	□□□□□ -0.23
RBM39-223	ENST00000463004	ANGEL1	Q9UNK9	670 aa	Known RBP	13.58	□□□□□ -0.23
RBM39-223	ENST00000463004	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.58	□□□□□ -0.23
RBM39-223	ENST00000463004	SIGLEC1	Q9BZZ2	1709 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	PATL2	C9JE40	543 aa	Known RBP	13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	KDM4A	O75164	1064 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	USPL1	Q5W0Q7	1092 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	ISCA1	Q9BUE6	129 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	LUC7L	Q9NQ29	371 aa	Known RBP	13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	TCP11L1	Q9NUJ3	509 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	ZAP70	P43403	619 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	RC3H1	Q5TC82	1133 aa	Known RBP	13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	STX8	Q9UNK0	236 aa		13.58	□□□□□ -0.24
RBM39-223	ENST00000463004	TEX11	Q8IYF3	940 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	MPND	Q8N594	471 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	NARF	Q9UHQ1	456 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	XDH	P47989	1333 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	SPATA31A1	Q5TZJ5	1347 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	SEC24B	O95487	1268 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	CYP19A1	P11511	503 aa	Predicted RBP	13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	PTPN12	Q05209	780 aa	Known RBP	13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	CCDC102B	Q68D86	513 aa		13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.57	□□□□□ -0.24
RBM39-223	ENST00000463004	AFF2	P51816	1311 aa		13.56	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms