RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ZC3H15Q8WU90 426 aaKnown RBP23.23■■□□□ 1.31
USP39-209ENST00000458268 HDAC9Q9UKV0 1011 aa23.23■■□□□ 1.31
USP39-209ENST00000458268 SCAF8Q9UPN6 1271 aaKnown RBP23.23■■□□□ 1.31
USP39-209ENST00000458268 CELF2O95319 508 aaKnown RBP23.22■■□□□ 1.31
USP39-209ENST00000458268 GRM1Q13255 1194 aa23.22■■□□□ 1.31
USP39-209ENST00000458268 ATP2B3Q16720 1220 aa23.22■■□□□ 1.31
USP39-209ENST00000458268 CDC37L1Q7L3B6 337 aa23.22■■□□□ 1.31
USP39-209ENST00000458268 CERS5Q8N5B7 392 aa23.22■■□□□ 1.31
USP39-209ENST00000458268 DNAJC5GQ8N7S2 189 aa23.22■■□□□ 1.31
USP39-209ENST00000458268 ZNF609O15014 1411 aa23.22■■□□□ 1.31
USP39-209ENST00000458268 CEP350Q5VT06 3117 aa23.21■■□□□ 1.31
USP39-209ENST00000458268 BCAMP50895 628 aa23.21■■□□□ 1.31
USP39-209ENST00000458268 PNMA6EA0A0J9YXQ4 647 aa23.2■■□□□ 1.3
USP39-209ENST00000458268 CIAO1O76071 339 aa23.2■■□□□ 1.3
USP39-209ENST00000458268 IL15P40933 162 aaPredicted RBP23.2■■□□□ 1.3
USP39-209ENST00000458268 RBM5P52756 815 aaKnown RBP eCLIP23.2■■□□□ 1.3
USP39-209ENST00000458268 NBPF9Q3BBW0 867 aa23.2■■□□□ 1.3
USP39-209ENST00000458268 SULF1Q8IWU6 871 aa23.2■■□□□ 1.3
USP39-209ENST00000458268 COPRSQ9NQ92 184 aa23.2■■□□□ 1.3
USP39-209ENST00000458268 PGAP2Q9UHJ9 254 aa23.2■■□□□ 1.3
USP39-209ENST00000458268 MFSD14BQ5SR56 506 aa23.19■■□□□ 1.3
USP39-209ENST00000458268 TDRD7Q8NHU6 1098 aaKnown RBP23.19■■□□□ 1.3
USP39-209ENST00000458268 LPIN2Q92539 896 aa23.19■■□□□ 1.3
USP39-209ENST00000458268 MS4A1P11836 297 aa23.18■■□□□ 1.3
USP39-209ENST00000458268 OS9Q13438 667 aaPredicted RBP23.18■■□□□ 1.3
USP39-209ENST00000458268 FBXO33Q7Z6M2 555 aa23.18■■□□□ 1.3
USP39-209ENST00000458268 FBXO3Q9UK99 471 aa23.18■■□□□ 1.3
USP39-209ENST00000458268 COG6Q9Y2V7 657 aa23.18■■□□□ 1.3
USP39-209ENST00000458268 ARAP2Q8WZ64 1704 aa23.18■■□□□ 1.3
USP39-209ENST00000458268 FGFR2P21802 821 aa23.17■■□□□ 1.3
USP39-209ENST00000458268 TFCP2Q12800 502 aa23.17■■□□□ 1.3
USP39-209ENST00000458268 G3BP1Q13283 466 aaKnown RBP eCLIP23.17■■□□□ 1.3
USP39-209ENST00000458268 MTX1Q13505 466 aa23.17■■□□□ 1.3
USP39-209ENST00000458268 DLGAP5Q15398 846 aa23.16■■□□□ 1.3
USP39-209ENST00000458268 CST9Q5W186 159 aa23.16■■□□□ 1.3
USP39-209ENST00000458268 PCDHAC2Q9Y5I4 1007 aa23.16■■□□□ 1.3
USP39-209ENST00000458268 FAM205AQ6ZU69 1335 aa23.15■■□□□ 1.3
USP39-209ENST00000458268 WNT10BO00744 389 aa23.15■■□□□ 1.3
USP39-209ENST00000458268 ZBTB7BO15156 539 aaPredicted RBP23.15■■□□□ 1.3
USP39-209ENST00000458268 ADORA1P30542 326 aa23.15■■□□□ 1.3
USP39-209ENST00000458268 TTF2Q9UNY4 1162 aaKnown RBP23.15■■□□□ 1.3
USP39-209ENST00000458268 CNTNAP1P78357 1384 aa23.14■■□□□ 1.3
USP39-209ENST00000458268 DEFB115Q30KQ5 88 aa23.14■■□□□ 1.29
USP39-209ENST00000458268 CFAP100Q494V2 611 aa23.14■■□□□ 1.29
USP39-209ENST00000458268 NEUROD6Q96NK8 337 aa23.14■■□□□ 1.29
USP39-209ENST00000458268 PRAMEF18Q5VWM3 479 aa23.13■■□□□ 1.29
USP39-209ENST00000458268 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.13■■□□□ 1.29
USP39-209ENST00000458268 CDCA5Q96FF9 252 aa23.13■■□□□ 1.29
USP39-209ENST00000458268 CLRN2A0PK11 232 aa23.12■■□□□ 1.29
USP39-209ENST00000458268 VEGFBP49765 207 aa23.12■■□□□ 1.29
USP39-209ENST00000458268 TIMM10P62072 90 aa23.12■■□□□ 1.29
USP39-209ENST00000458268 ATP8B2P98198 1209 aa23.12■■□□□ 1.29
USP39-209ENST00000458268 MVPQ14764 893 aaKnown RBP23.12■■□□□ 1.29
USP39-209ENST00000458268 GNL3LQ9NVN8 582 aaKnown RBP23.12■■□□□ 1.29
USP39-209ENST00000458268 ECM29Q5VYK3 1845 aa23.12■■□□□ 1.29
USP39-209ENST00000458268 A0A1B0GUL7 405 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 SURF6O75683 361 aaKnown RBP23.11■■□□□ 1.29
USP39-209ENST00000458268 PHKA1P46020 1223 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 FKBP1AP62942 108 aaKnown RBP23.11■■□□□ 1.29
USP39-209ENST00000458268 GRIK5Q16478 980 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 GORABQ5T7V8 394 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 C20orf194Q5TEA3 1177 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 BCL11AQ9H165 835 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 VEZTQ9HBM0 779 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 AKAP2Q9Y2D5 859 aa23.11■■□□□ 1.29
USP39-209ENST00000458268 CYP4F22Q6NT55 531 aa23.1■■□□□ 1.29
USP39-209ENST00000458268 TBC1D22AQ8WUA7 517 aa23.1■■□□□ 1.29
USP39-209ENST00000458268 GBA2Q9HCG7 927 aaPredicted RBP23.1■■□□□ 1.29
USP39-209ENST00000458268 DDX19BQ9UMR2 479 aa23.1■■□□□ 1.29
USP39-209ENST00000458268 TLL2Q9Y6L7 1015 aa23.1■■□□□ 1.29
USP39-209ENST00000458268 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.1■■□□□ 1.29
USP39-209ENST00000458268 RASSF10A6NK89 507 aa23.09■■□□□ 1.29
USP39-209ENST00000458268 MYO1BO43795 1136 aa23.09■■□□□ 1.29
USP39-209ENST00000458268 TTLL12Q14166 644 aaPredicted RBP23.09■■□□□ 1.29
USP39-209ENST00000458268 POLA2Q14181 598 aa23.09■■□□□ 1.29
USP39-209ENST00000458268 C2orf69Q8N8R5 385 aa23.09■■□□□ 1.29
USP39-209ENST00000458268 PITPNM2Q9BZ72 1349 aa23.08■■□□□ 1.29
USP39-209ENST00000458268 MMP14P50281 582 aa23.08■■□□□ 1.29
USP39-209ENST00000458268 HUNKP57058 714 aa23.08■■□□□ 1.29
USP39-209ENST00000458268 CEP85Q6P2H3 762 aa23.08■■□□□ 1.29
USP39-209ENST00000458268 SSH3Q8TE77 659 aa23.08■■□□□ 1.29
USP39-209ENST00000458268 XAGE2Q96GT9 111 aa23.08■■□□□ 1.29
USP39-209ENST00000458268 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.08■■□□□ 1.29
USP39-209ENST00000458268 COL1A1P02452 1464 aaPredicted RBP23.08■■□□□ 1.29
USP39-209ENST00000458268 PRKG1Q13976 671 aa23.07■■□□□ 1.28
USP39-209ENST00000458268 CCDC102BQ68D86 513 aa23.07■■□□□ 1.28
USP39-209ENST00000458268 APOBEC3FQ8IUX4 373 aaKnown RBP23.07■■□□□ 1.28
USP39-209ENST00000458268 JMYQ8N9B5 988 aa23.07■■□□□ 1.28
USP39-209ENST00000458268 CAPNS2Q96L46 248 aa23.07■■□□□ 1.28
USP39-209ENST00000458268 PRMT6Q96LA8 375 aaPredicted RBP23.07■■□□□ 1.28
USP39-209ENST00000458268 AOX1Q06278 1338 aa23.07■■□□□ 1.28
USP39-209ENST00000458268 WDR33Q9C0J8 1336 aaKnown RBP23.07■■□□□ 1.28
USP39-209ENST00000458268 SPDYE2BA6NHP3 402 aa23.06■■□□□ 1.28
USP39-209ENST00000458268 SPDYE6P0CI01 402 aa23.06■■□□□ 1.28
USP39-209ENST00000458268 CRKP46108 304 aa23.06■■□□□ 1.28
USP39-209ENST00000458268 SAPCD2Q86UD0 394 aa23.06■■□□□ 1.28
USP39-209ENST00000458268 APBB1O00213 710 aa23.05■■□□□ 1.28
USP39-209ENST00000458268 WDR66Q8TBY9 1149 aa23.05■■□□□ 1.28
USP39-209ENST00000458268 ZBED3Q96IU2 234 aaPredicted RBP23.05■■□□□ 1.28
USP39-209ENST00000458268 TDRD3Q9H7E2 651 aaKnown RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms