RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CERS5Q8N5B7 392 aa26.54■■□□□ 1.84
HMGB3-205ENST00000455596 TDRD7Q8NHU6 1098 aaKnown RBP26.54■■□□□ 1.84
HMGB3-205ENST00000455596 FRAT1Q92837 279 aaPredicted RBP26.54■■□□□ 1.84
HMGB3-205ENST00000455596 FAM84BQ96KN1 310 aaPredicted RBP26.54■■□□□ 1.84
HMGB3-205ENST00000455596 HUNKP57058 714 aa26.53■■□□□ 1.84
HMGB3-205ENST00000455596 MEIS3Q99687 375 aa26.53■■□□□ 1.84
HMGB3-205ENST00000455596 WBP1LQ9NX94 342 aa26.53■■□□□ 1.84
HMGB3-205ENST00000455596 LRRFIP2Q9Y608 721 aaKnown RBP26.53■■□□□ 1.84
HMGB3-205ENST00000455596 EYA2O00167 538 aa26.52■■□□□ 1.84
HMGB3-205ENST00000455596 PTPN12Q05209 780 aaKnown RBP26.52■■□□□ 1.84
HMGB3-205ENST00000455596 ATF7IPQ6VMQ6 1270 aa26.52■■□□□ 1.84
HMGB3-205ENST00000455596 FAM205AQ6ZU69 1335 aa26.52■■□□□ 1.84
HMGB3-205ENST00000455596 JAG2Q9Y219 1238 aa26.52■■□□□ 1.84
HMGB3-205ENST00000455596 PAPPA2Q9BXP8 1791 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 PCNTO95613 3336 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 ZBED9Q6R2W3 1325 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 FOXN1O15353 648 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 TRIM27P14373 513 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 CAVIN4Q5BKX8 364 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 COL13A1Q5TAT6 717 aaPredicted RBP26.51■■□□□ 1.83
HMGB3-205ENST00000455596 VPS37DQ86XT2 251 aa26.51■■□□□ 1.83
HMGB3-205ENST00000455596 F8W031 263 aaPredicted RBP26.5■■□□□ 1.83
HMGB3-205ENST00000455596 GNAI3P08754 354 aa26.5■■□□□ 1.83
HMGB3-205ENST00000455596 MAP2K2P36507 400 aa26.5■■□□□ 1.83
HMGB3-205ENST00000455596 DLGAP5Q15398 846 aa26.5■■□□□ 1.83
HMGB3-205ENST00000455596 ZBED3Q96IU2 234 aaPredicted RBP26.5■■□□□ 1.83
HMGB3-205ENST00000455596 FBXO3Q9UK99 471 aa26.5■■□□□ 1.83
HMGB3-205ENST00000455596 SCAF8Q9UPN6 1271 aaKnown RBP26.5■■□□□ 1.83
HMGB3-205ENST00000455596 PUM3Q15397 648 aaKnown RBP26.49■■□□□ 1.83
HMGB3-205ENST00000455596 FBXO33Q7Z6M2 555 aa26.49■■□□□ 1.83
HMGB3-205ENST00000455596 AOC2O75106 756 aa26.48■■□□□ 1.83
HMGB3-205ENST00000455596 IFIT1P09914 478 aaKnown RBP26.48■■□□□ 1.83
HMGB3-205ENST00000455596 MFSD14BQ5SR56 506 aa26.48■■□□□ 1.83
HMGB3-205ENST00000455596 APOBEC3FQ8IUX4 373 aaKnown RBP26.48■■□□□ 1.83
HMGB3-205ENST00000455596 MTMR14Q8NCE2 650 aa26.48■■□□□ 1.83
HMGB3-205ENST00000455596 CIAO1O76071 339 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 FGFR2P21802 821 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 CTCFP49711 727 aaPredicted RBP26.47■■□□□ 1.83
HMGB3-205ENST00000455596 IFFO2Q5TF58 517 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 ZKSCAN2Q63HK3 967 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 RGMBQ6NW40 437 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 SIL1Q9H173 461 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 TNNQ9UQP3 1299 aa26.47■■□□□ 1.83
HMGB3-205ENST00000455596 FRAT2O75474 233 aaPredicted RBP26.46■■□□□ 1.83
HMGB3-205ENST00000455596 CFAP100Q494V2 611 aa26.46■■□□□ 1.83
HMGB3-205ENST00000455596 ATG9AQ7Z3C6 839 aa26.46■■□□□ 1.83
HMGB3-205ENST00000455596 CLUAP1Q96AJ1 413 aa26.46■■□□□ 1.83
HMGB3-205ENST00000455596 BEGAINQ9BUH8 593 aa26.46■■□□□ 1.83
HMGB3-205ENST00000455596 SLC5A1P13866 664 aa26.45■■□□□ 1.82
HMGB3-205ENST00000455596 FKBP1BP68106 108 aa26.45■■□□□ 1.82
HMGB3-205ENST00000455596 IQSEC3Q9UPP2 1182 aaPredicted RBP26.45■■□□□ 1.82
HMGB3-205ENST00000455596 COL1A1P02452 1464 aaPredicted RBP26.44■■□□□ 1.82
HMGB3-205ENST00000455596 MYO1BO43795 1136 aa26.44■■□□□ 1.82
HMGB3-205ENST00000455596 NOGQ13253 232 aa26.44■■□□□ 1.82
HMGB3-205ENST00000455596 PRAMEF18Q5VWM3 479 aa26.44■■□□□ 1.82
HMGB3-205ENST00000455596 LPIN2Q92539 896 aa26.44■■□□□ 1.82
HMGB3-205ENST00000455596 NF2P35240 595 aa26.43■■□□□ 1.82
HMGB3-205ENST00000455596 BCAMP50895 628 aa26.43■■□□□ 1.82
HMGB3-205ENST00000455596 ZNF157P51786 506 aaPredicted RBP26.43■■□□□ 1.82
HMGB3-205ENST00000455596 RBM5P52756 815 aaKnown RBP eCLIP26.43■■□□□ 1.82
HMGB3-205ENST00000455596 CCDC102AQ96A19 550 aa26.43■■□□□ 1.82
HMGB3-205ENST00000455596 CEP126Q9P2H0 1117 aa26.43■■□□□ 1.82
HMGB3-205ENST00000455596 TTF2Q9UNY4 1162 aaKnown RBP26.43■■□□□ 1.82
HMGB3-205ENST00000455596 PCDHAC2Q9Y5I4 1007 aa26.43■■□□□ 1.82
HMGB3-205ENST00000455596 AKAP11Q9UKA4 1901 aa26.43■■□□□ 1.82
HMGB3-205ENST00000455596 SPDYE2BA6NHP3 402 aa26.42■■□□□ 1.82
HMGB3-205ENST00000455596 SPDYE6P0CI01 402 aa26.42■■□□□ 1.82
HMGB3-205ENST00000455596 CHAF1AQ13111 956 aaPredicted RBP26.42■■□□□ 1.82
HMGB3-205ENST00000455596 TBC1D22AQ8WUA7 517 aa26.42■■□□□ 1.82
HMGB3-205ENST00000455596 COPRSQ9NQ92 184 aa26.42■■□□□ 1.82
HMGB3-205ENST00000455596 PRDM10Q9NQV6 1147 aa26.42■■□□□ 1.82
HMGB3-205ENST00000455596 PA2G4Q9UQ80 394 aaKnown RBP26.42■■□□□ 1.82
HMGB3-205ENST00000455596 IL15P40933 162 aaPredicted RBP26.41■■□□□ 1.82
HMGB3-205ENST00000455596 PRMT6Q96LA8 375 aaPredicted RBP26.41■■□□□ 1.82
HMGB3-205ENST00000455596 FAM155AB1AL88 458 aaPredicted RBP26.4■■□□□ 1.82
HMGB3-205ENST00000455596 SRGAP3O43295 1099 aa26.4■■□□□ 1.82
HMGB3-205ENST00000455596 LBX1P52954 281 aa26.4■■□□□ 1.82
HMGB3-205ENST00000455596 MTX1Q13505 466 aa26.4■■□□□ 1.82
HMGB3-205ENST00000455596 TMEM57Q8N5G2 664 aa26.4■■□□□ 1.82
HMGB3-205ENST00000455596 SERPINA10Q9UK55 444 aa26.4■■□□□ 1.82
HMGB3-205ENST00000455596 GNAI2P04899 355 aa26.39■■□□□ 1.82
HMGB3-205ENST00000455596 HSPA8P11142 646 aaKnown RBP26.39■■□□□ 1.82
HMGB3-205ENST00000455596 TTLL12Q14166 644 aaPredicted RBP26.39■■□□□ 1.82
HMGB3-205ENST00000455596 ATP2B3Q16720 1220 aa26.39■■□□□ 1.82
HMGB3-205ENST00000455596 TNS4Q8IZW8 715 aa26.39■■□□□ 1.82
HMGB3-205ENST00000455596 CLRN2A0PK11 232 aa26.38■■□□□ 1.81
HMGB3-205ENST00000455596 SLC10A3P09131 477 aa26.38■■□□□ 1.81
HMGB3-205ENST00000455596 DEFB129Q9H1M3 183 aa26.38■■□□□ 1.81
HMGB3-205ENST00000455596 PPP2R3BQ9Y5P8 575 aa26.38■■□□□ 1.81
HMGB3-205ENST00000455596 MOB2Q70IA6 237 aa26.37■■□□□ 1.81
HMGB3-205ENST00000455596 FTSJ3Q8IY81 847 aaKnown RBP26.37■■□□□ 1.81
HMGB3-205ENST00000455596 ZIC5Q96T25 663 aa26.37■■□□□ 1.81
HMGB3-205ENST00000455596 VEZTQ9HBM0 779 aa26.37■■□□□ 1.81
HMGB3-205ENST00000455596 CA12O43570 354 aa26.36■■□□□ 1.81
HMGB3-205ENST00000455596 UBE2Q2LH0YL09 131 aa26.35■■□□□ 1.81
HMGB3-205ENST00000455596 CRKP46108 304 aa26.35■■□□□ 1.81
HMGB3-205ENST00000455596 GRIK5Q16478 980 aa26.35■■□□□ 1.81
HMGB3-205ENST00000455596 ARMC9Q7Z3E5 817 aa26.35■■□□□ 1.81
HMGB3-205ENST00000455596 RASAL3Q86YV0 1011 aa26.35■■□□□ 1.81
HMGB3-205ENST00000455596 DZIP1LQ8IYY4 767 aaKnown RBP26.35■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms