RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 WNT10BO00744 389 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 IL1R1P14778 569 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 UBE4AQ14139 1066 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 TTLL12Q14166 644 aaPredicted RBP8.92□□□□□ -0.98
VPS41-208ENST00000448833 NBPF9Q3BBW0 867 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 TXNRD3Q86VQ6 643 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 MTMR14Q8NCE2 650 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 HDAC5Q9UQL6 1122 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 PPP2R3BQ9Y5P8 575 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 MROH5Q6ZUA9 1318 aa8.91□□□□□ -0.98
VPS41-208ENST00000448833 WTIPA6NIX2 430 aaPredicted RBP8.91□□□□□ -0.98
VPS41-208ENST00000448833 PPP1R12BO60237 982 aaPredicted RBP8.91□□□□□ -0.98
VPS41-208ENST00000448833 SASH1O94885 1247 aa8.91□□□□□ -0.98
VPS41-208ENST00000448833 INHBEP58166 350 aa8.91□□□□□ -0.98
VPS41-208ENST00000448833 SUPT20HL1Q3ZLR7 823 aa8.91□□□□□ -0.98
VPS41-208ENST00000448833 KIAA0825Q8IV33 1275 aa8.91□□□□□ -0.98
VPS41-208ENST00000448833 CSRNP1Q96S65 589 aa8.91□□□□□ -0.98
VPS41-208ENST00000448833 UTYO14607 1347 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 ASTN2O75129 1339 aaPredicted RBP8.9□□□□□ -0.98
VPS41-208ENST00000448833 CCDC85CA6NKD9 419 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 TAF5LO75529 589 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 TRPA1O75762 1119 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 SREBF2Q12772 1141 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 DGKZQ13574 1117 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 TNFAIP1Q13829 316 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 CAVIN4Q5BKX8 364 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 DLK2Q6UY11 383 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 RNF186Q9NXI6 227 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 TSKSQ9UJT2 592 aa8.9□□□□□ -0.98
VPS41-208ENST00000448833 FAM205AQ6ZU69 1335 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 ZNF521Q96K83 1311 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 UBE2Q2LH0YL09 131 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 PLIN1O60240 522 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 ALDH1A1P00352 501 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 CT47B1P0C2W7 299 aaPredicted RBP8.89□□□□□ -0.99
VPS41-208ENST00000448833 HIBADHP31937 336 aaKnown RBP8.89□□□□□ -0.99
VPS41-208ENST00000448833 TM4SF4P48230 202 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 PKN2Q16513 984 aaKnown RBP8.89□□□□□ -0.99
VPS41-208ENST00000448833 ALDH1L2Q3SY69 923 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 NOM1Q5C9Z4 860 aaKnown RBP8.89□□□□□ -0.99
VPS41-208ENST00000448833 VPS37DQ86XT2 251 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 RASAL3Q86YV0 1011 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 HELBQ8NG08 1087 aaPredicted RBP8.89□□□□□ -0.99
VPS41-208ENST00000448833 DEFB129Q9H1M3 183 aa8.89□□□□□ -0.99
VPS41-208ENST00000448833 FRAT2O75474 233 aaPredicted RBP8.88□□□□□ -0.99
VPS41-208ENST00000448833 RGS19P49795 217 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 RBM5P52756 815 aaKnown RBP eCLIP8.88□□□□□ -0.99
VPS41-208ENST00000448833 TDRD7Q8NHU6 1098 aaKnown RBP8.88□□□□□ -0.99
VPS41-208ENST00000448833 TBC1D22AQ8WUA7 517 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 SLC10A4Q96EP9 437 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 ZBED3Q96IU2 234 aaPredicted RBP8.88□□□□□ -0.99
VPS41-208ENST00000448833 MXD3Q9BW11 206 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 MCOLN1Q9GZU1 580 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 SERPINA10Q9UK55 444 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 MYH13Q9UKX3 1938 aa8.88□□□□□ -0.99
VPS41-208ENST00000448833 IRS2Q9Y4H2 1338 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 SPDYE2BA6NHP3 402 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 MANSC4A6NHS7 340 aaPredicted RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 PDE8BO95263 885 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 NBPF7P0C2Y1 421 aaPredicted RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 SPDYE6P0CI01 402 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 ZBTB48P10074 688 aaPredicted RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 KLRK1P26718 216 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 IREB2P48200 963 aaKnown RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 TNNI2P48788 182 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 HDLBPQ00341 1268 aaKnown RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 MLLT1Q03111 559 aaPredicted RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 MAP3K11Q16584 847 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 RABL6Q3YEC7 729 aaPredicted RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 CFAP100Q494V2 611 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 METTL24Q5JXM2 366 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 EPHA10Q5JZY3 1008 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 LDLRAD1Q5T700 205 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 OTUD7BQ6GQQ9 843 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 MRPL50Q8N5N7 158 aaKnown RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 HOOK2Q96ED9 719 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 ZNF594Q96JF6 807 aaPredicted RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 ZIC5Q96T25 663 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 MRIQ9BWK5 157 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 FBXO3Q9UK99 471 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 ANGEL1Q9UNK9 670 aaKnown RBP8.87□□□□□ -0.99
VPS41-208ENST00000448833 RIPOR2Q9Y4F9 1068 aa8.87□□□□□ -0.99
VPS41-208ENST00000448833 LAMB1P07942 1786 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 MAST3O60307 1309 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 KIF16BQ96L93 1317 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 ARAP2Q8WZ64 1704 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 F8W031 263 aaPredicted RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 IFIT1P09914 478 aaKnown RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 SLFN5Q08AF3 891 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 MFSD14BQ5SR56 506 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 PRAMEF18Q5VWM3 479 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 CTU1Q7Z7A3 348 aaKnown RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 CERS5Q8N5B7 392 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 SUCLG2Q96I99 432 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 FAM84BQ96KN1 310 aaPredicted RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 PRMT6Q96LA8 375 aaPredicted RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 CFHR5Q9BXR6 569 aa8.86□□□□□ -0.99
VPS41-208ENST00000448833 BICC1Q9H694 974 aaKnown RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 TTF2Q9UNY4 1162 aaKnown RBP8.86□□□□□ -0.99
VPS41-208ENST00000448833 SUGT1Q9Y2Z0 365 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms