RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PCDHAC2Q9Y5I4 1007 aa26.11■■□□□ 1.77
SDC1-205ENST00000447124 BRPF1P55201 1214 aaPredicted RBP26.1■■□□□ 1.77
SDC1-205ENST00000447124 NOGQ13253 232 aa26.1■■□□□ 1.77
SDC1-205ENST00000447124 MOB2Q70IA6 237 aa26.1■■□□□ 1.77
SDC1-205ENST00000447124 TDRD7Q8NHU6 1098 aaKnown RBP26.1■■□□□ 1.77
SDC1-205ENST00000447124 BEGAINQ9BUH8 593 aa26.1■■□□□ 1.77
SDC1-205ENST00000447124 CAPN15O75808 1086 aa26.09■■□□□ 1.77
SDC1-205ENST00000447124 ZNF157P51786 506 aaPredicted RBP26.09■■□□□ 1.77
SDC1-205ENST00000447124 FKBP1AP62942 108 aaKnown RBP26.09■■□□□ 1.77
SDC1-205ENST00000447124 MROH5Q6ZUA9 1318 aa26.09■■□□□ 1.77
SDC1-205ENST00000447124 F8W031 263 aaPredicted RBP26.08■■□□□ 1.77
SDC1-205ENST00000447124 HIBADHP31937 336 aaKnown RBP26.08■■□□□ 1.77
SDC1-205ENST00000447124 RFX5P48382 616 aaPredicted RBP26.08■■□□□ 1.77
SDC1-205ENST00000447124 RARSP54136 660 aaKnown RBP26.08■■□□□ 1.77
SDC1-205ENST00000447124 CCDC102AQ96A19 550 aa26.08■■□□□ 1.77
SDC1-205ENST00000447124 MIER1Q8N108 512 aa26.07■■□□□ 1.76
SDC1-205ENST00000447124 FAM205AQ6ZU69 1335 aa26.07■■□□□ 1.76
SDC1-205ENST00000447124 KIF23Q02241 960 aaPredicted RBP26.06■■□□□ 1.76
SDC1-205ENST00000447124 DLGAP5Q15398 846 aa26.06■■□□□ 1.76
SDC1-205ENST00000447124 FBXO33Q7Z6M2 555 aa26.06■■□□□ 1.76
SDC1-205ENST00000447124 VGLL2Q8N8G2 317 aa26.06■■□□□ 1.76
SDC1-205ENST00000447124 MTMR14Q8NCE2 650 aa26.06■■□□□ 1.76
SDC1-205ENST00000447124 UBE2Q2LH0YL09 131 aa26.05■■□□□ 1.76
SDC1-205ENST00000447124 FKBP1BP68106 108 aa26.05■■□□□ 1.76
SDC1-205ENST00000447124 METTL24Q5JXM2 366 aa26.05■■□□□ 1.76
SDC1-205ENST00000447124 AOX1Q06278 1338 aa26.05■■□□□ 1.76
SDC1-205ENST00000447124 PDE8BO95263 885 aa26.04■■□□□ 1.76
SDC1-205ENST00000447124 SLC10A3P09131 477 aa26.04■■□□□ 1.76
SDC1-205ENST00000447124 CFAP100Q494V2 611 aa26.04■■□□□ 1.76
SDC1-205ENST00000447124 PRMT6Q96LA8 375 aaPredicted RBP26.04■■□□□ 1.76
SDC1-205ENST00000447124 API5Q9BZZ5 524 aaKnown RBP26.04■■□□□ 1.76
SDC1-205ENST00000447124 PTPN12Q05209 780 aaKnown RBP26.02■■□□□ 1.76
SDC1-205ENST00000447124 CA12O43570 354 aa26.01■■□□□ 1.75
SDC1-205ENST00000447124 RASAL3Q86YV0 1011 aa26.01■■□□□ 1.75
SDC1-205ENST00000447124 APOBEC3FQ8IUX4 373 aaKnown RBP26.01■■□□□ 1.75
SDC1-205ENST00000447124 CSRNP1Q96S65 589 aa26.01■■□□□ 1.75
SDC1-205ENST00000447124 IQSEC3Q9UPP2 1182 aaPredicted RBP26.01■■□□□ 1.75
SDC1-205ENST00000447124 SPDYE2BA6NHP3 402 aa26■■□□□ 1.75
SDC1-205ENST00000447124 EYA2O00167 538 aa26■■□□□ 1.75
SDC1-205ENST00000447124 SPDYE6P0CI01 402 aa26■■□□□ 1.75
SDC1-205ENST00000447124 FGFR2P21802 821 aa26■■□□□ 1.75
SDC1-205ENST00000447124 GRIK5Q16478 980 aa26■■□□□ 1.75
SDC1-205ENST00000447124 MFSD14BQ5SR56 506 aa26■■□□□ 1.75
SDC1-205ENST00000447124 DEFB129Q9H1M3 183 aa26■■□□□ 1.75
SDC1-205ENST00000447124 UBTFL1P0CB47 393 aaPredicted RBP25.99■■□□□ 1.75
SDC1-205ENST00000447124 BCAMP50895 628 aa25.99■■□□□ 1.75
SDC1-205ENST00000447124 ATG9AQ7Z3C6 839 aa25.99■■□□□ 1.75
SDC1-205ENST00000447124 CLRN2A0PK11 232 aa25.98■■□□□ 1.75
SDC1-205ENST00000447124 TTLL12Q14166 644 aaPredicted RBP25.98■■□□□ 1.75
SDC1-205ENST00000447124 DIEXFQ68CQ4 756 aaKnown RBP25.98■■□□□ 1.75
SDC1-205ENST00000447124 ARHGAP45Q92619 1136 aa25.98■■□□□ 1.75
SDC1-205ENST00000447124 PAPPA2Q9BXP8 1791 aa25.97■■□□□ 1.75
SDC1-205ENST00000447124 PRKG1Q13976 671 aa25.97■■□□□ 1.75
SDC1-205ENST00000447124 MEIS3Q99687 375 aa25.97■■□□□ 1.75
SDC1-205ENST00000447124 RNF186Q9NXI6 227 aa25.97■■□□□ 1.75
SDC1-205ENST00000447124 TTF2Q9UNY4 1162 aaKnown RBP25.97■■□□□ 1.75
SDC1-205ENST00000447124 FZD1Q9UP38 647 aa25.97■■□□□ 1.75
SDC1-205ENST00000447124 LRRFIP2Q9Y608 721 aaKnown RBP25.97■■□□□ 1.75
SDC1-205ENST00000447124 BCAR3O75815 825 aa25.96■■□□□ 1.75
SDC1-205ENST00000447124 NF2P35240 595 aa25.96■■□□□ 1.75
SDC1-205ENST00000447124 RBM5P52756 815 aaKnown RBP eCLIP25.96■■□□□ 1.753e-7■■■■□ 25.8
SDC1-205ENST00000447124 CAVIN4Q5BKX8 364 aa25.96■■□□□ 1.75
SDC1-205ENST00000447124 INTS3Q68E01 1043 aaKnown RBP25.96■■□□□ 1.75
SDC1-205ENST00000447124 VPS37DQ86XT2 251 aa25.96■■□□□ 1.75
SDC1-205ENST00000447124 TNNQ9UQP3 1299 aa25.96■■□□□ 1.75
SDC1-205ENST00000447124 CHAF1AQ13111 956 aaPredicted RBP25.95■■□□□ 1.74
SDC1-205ENST00000447124 PUM3Q15397 648 aaKnown RBP25.94■■□□□ 1.74
SDC1-205ENST00000447124 LDLRAD1Q5T700 205 aa25.94■■□□□ 1.74
SDC1-205ENST00000447124 SERPINA10Q9UK55 444 aa25.94■■□□□ 1.74
SDC1-205ENST00000447124 CASP8AP2Q9UKL3 1982 aa25.94■■□□□ 1.74
SDC1-205ENST00000447124 MYO1BO43795 1136 aa25.93■■□□□ 1.74
SDC1-205ENST00000447124 TRPA1O75762 1119 aa25.93■■□□□ 1.74
SDC1-205ENST00000447124 IFIT1P09914 478 aaKnown RBP25.93■■□□□ 1.74
SDC1-205ENST00000447124 ARMC9Q7Z3E5 817 aa25.93■■□□□ 1.74
SDC1-205ENST00000447124 SIL1Q9H173 461 aa25.93■■□□□ 1.74
SDC1-205ENST00000447124 VEZTQ9HBM0 779 aa25.93■■□□□ 1.74
SDC1-205ENST00000447124 ZNF70Q9UC06 446 aaPredicted RBP25.93■■□□□ 1.74
SDC1-205ENST00000447124 PA2G4Q9UQ80 394 aaKnown RBP25.93■■□□□ 1.74
SDC1-205ENST00000447124 CRKP46108 304 aa25.92■■□□□ 1.74
SDC1-205ENST00000447124 DZIP1LQ8IYY4 767 aaKnown RBP25.92■■□□□ 1.74
SDC1-205ENST00000447124 TDRD3Q9H7E2 651 aaKnown RBP25.92■■□□□ 1.74
SDC1-205ENST00000447124 ANGEL1Q9UNK9 670 aaKnown RBP25.92■■□□□ 1.74
SDC1-205ENST00000447124 KIF16BQ96L93 1317 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 FRAT2O75474 233 aaPredicted RBP25.91■■□□□ 1.74
SDC1-205ENST00000447124 CIAO1O76071 339 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 RASA3Q14644 834 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 SPDYE2Q495Y8 402 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 NBPF12Q5TAG4 269 aaPredicted RBP25.91■■□□□ 1.74
SDC1-205ENST00000447124 LPIN2Q92539 896 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 ABHD8Q96I13 439 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 SAGE1Q9NXZ1 904 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 FBXO3Q9UK99 471 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 PPP2R3BQ9Y5P8 575 aa25.91■■□□□ 1.74
SDC1-205ENST00000447124 TRIM27P14373 513 aa25.9■■□□□ 1.74
SDC1-205ENST00000447124 REM2Q8IYK8 340 aaPredicted RBP25.9■■□□□ 1.74
SDC1-205ENST00000447124 TBC1D22AQ8WUA7 517 aa25.9■■□□□ 1.74
SDC1-205ENST00000447124 HDAC5Q9UQL6 1122 aa25.9■■□□□ 1.74
SDC1-205ENST00000447124 SLC5A1P13866 664 aa25.89■■□□□ 1.74
SDC1-205ENST00000447124 HNRNPUQ00839 825 aaKnown RBP eCLIP25.89■■□□□ 1.74
SDC1-205ENST00000447124 MKRN3Q13064 507 aaKnown RBP25.89■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms