RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-208ENST00000443727 CTCFP49711 727 aaPredicted RBP25.12■■□□□ 1.61
LRCH3-208ENST00000443727 MAP2K2P36507 400 aa25.11■■□□□ 1.61
LRCH3-208ENST00000443727 CERS5Q8N5B7 392 aa25.11■■□□□ 1.61
LRCH3-208ENST00000443727 FRAT1Q92837 279 aaPredicted RBP25.11■■□□□ 1.61
LRCH3-208ENST00000443727 SCAF8Q9UPN6 1271 aaKnown RBP25.11■■□□□ 1.61
LRCH3-208ENST00000443727 PDE8BO95263 885 aa25.1■■□□□ 1.61
LRCH3-208ENST00000443727 DLGAP5Q15398 846 aa25.1■■□□□ 1.61
LRCH3-208ENST00000443727 FAM84BQ96KN1 310 aaPredicted RBP25.1■■□□□ 1.61
LRCH3-208ENST00000443727 FKBP1AP62942 108 aaKnown RBP25.09■■□□□ 1.61
LRCH3-208ENST00000443727 CAVIN4Q5BKX8 364 aa25.09■■□□□ 1.61
LRCH3-208ENST00000443727 TNS4Q8IZW8 715 aa25.09■■□□□ 1.61
LRCH3-208ENST00000443727 LRRFIP2Q9Y608 721 aaKnown RBP25.09■■□□□ 1.61
LRCH3-208ENST00000443727 ZNF646O15015 1829 aaPredicted RBP25.08■■□□□ 1.61
LRCH3-208ENST00000443727 EYA2O00167 538 aa25.08■■□□□ 1.61
LRCH3-208ENST00000443727 FRAT2O75474 233 aaPredicted RBP25.08■■□□□ 1.61
LRCH3-208ENST00000443727 RGMBQ6NW40 437 aa25.08■■□□□ 1.61
LRCH3-208ENST00000443727 TDRD7Q8NHU6 1098 aaKnown RBP25.08■■□□□ 1.61
LRCH3-208ENST00000443727 BCAR3O75815 825 aa25.07■■□□□ 1.6
LRCH3-208ENST00000443727 ZNF157P51786 506 aaPredicted RBP25.07■■□□□ 1.6
LRCH3-208ENST00000443727 MFSD14BQ5SR56 506 aa25.07■■□□□ 1.6
LRCH3-208ENST00000443727 INTS3Q68E01 1043 aaKnown RBP25.07■■□□□ 1.6
LRCH3-208ENST00000443727 APOBEC3FQ8IUX4 373 aaKnown RBP25.07■■□□□ 1.6
LRCH3-208ENST00000443727 MEIS3Q99687 375 aa25.07■■□□□ 1.6
LRCH3-208ENST00000443727 FAM205AQ6ZU69 1335 aa25.07■■□□□ 1.6
LRCH3-208ENST00000443727 IFIT1P09914 478 aaKnown RBP25.06■■□□□ 1.6
LRCH3-208ENST00000443727 NF2P35240 595 aa25.06■■□□□ 1.6
LRCH3-208ENST00000443727 RFX5P48382 616 aaPredicted RBP25.06■■□□□ 1.6
LRCH3-208ENST00000443727 RBM5P52756 815 aaKnown RBP eCLIP25.06■■□□□ 1.6
LRCH3-208ENST00000443727 NOGQ13253 232 aa25.06■■□□□ 1.6
LRCH3-208ENST00000443727 PUM3Q15397 648 aaKnown RBP25.06■■□□□ 1.6
LRCH3-208ENST00000443727 PRAMEF18Q5VWM3 479 aa25.06■■□□□ 1.6
LRCH3-208ENST00000443727 VGLL2Q8N8G2 317 aa25.06■■□□□ 1.6
LRCH3-208ENST00000443727 SIL1Q9H173 461 aa25.06■■□□□ 1.6
LRCH3-208ENST00000443727 MYO1BO43795 1136 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 GNAI3P08754 354 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 LBX1P52954 281 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 FKBP1BP68106 108 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 PTPN12Q05209 780 aaKnown RBP25.05■■□□□ 1.6
LRCH3-208ENST00000443727 TTLL12Q14166 644 aaPredicted RBP25.05■■□□□ 1.6
LRCH3-208ENST00000443727 CFAP100Q494V2 611 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 ATF7IPQ6VMQ6 1270 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 FBXO33Q7Z6M2 555 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 CCDC102AQ96A19 550 aa25.05■■□□□ 1.6
LRCH3-208ENST00000443727 IQSEC3Q9UPP2 1182 aaPredicted RBP25.05■■□□□ 1.6
LRCH3-208ENST00000443727 TRIM27P14373 513 aa25.04■■□□□ 1.6
LRCH3-208ENST00000443727 CHAF1AQ13111 956 aaPredicted RBP25.04■■□□□ 1.6
LRCH3-208ENST00000443727 ZBED3Q96IU2 234 aaPredicted RBP25.04■■□□□ 1.6
LRCH3-208ENST00000443727 PRDM10Q9NQV6 1147 aa25.04■■□□□ 1.6
LRCH3-208ENST00000443727 SLC5A1P13866 664 aa25.03■■□□□ 1.6
LRCH3-208ENST00000443727 MTMR14Q8NCE2 650 aa25.03■■□□□ 1.6
LRCH3-208ENST00000443727 CLUAP1Q96AJ1 413 aa25.03■■□□□ 1.6
LRCH3-208ENST00000443727 TTF2Q9UNY4 1162 aaKnown RBP25.03■■□□□ 1.6
LRCH3-208ENST00000443727 THSD7BQ9C0I4 1608 aa25.03■■□□□ 1.6
LRCH3-208ENST00000443727 BCAMP50895 628 aa25.02■■□□□ 1.6
LRCH3-208ENST00000443727 CEP126Q9P2H0 1117 aa25.02■■□□□ 1.6
LRCH3-208ENST00000443727 FBXO3Q9UK99 471 aa25.02■■□□□ 1.6
LRCH3-208ENST00000443727 SPDYE2BA6NHP3 402 aa25.01■■□□□ 1.59
LRCH3-208ENST00000443727 SPDYE6P0CI01 402 aa25.01■■□□□ 1.59
LRCH3-208ENST00000443727 HSPA8P11142 646 aaKnown RBP25.01■■□□□ 1.59
LRCH3-208ENST00000443727 PCDHAC2Q9Y5I4 1007 aa25.01■■□□□ 1.59
LRCH3-208ENST00000443727 CIAO1O76071 339 aa25■■□□□ 1.59
LRCH3-208ENST00000443727 ZKSCAN2Q63HK3 967 aa25■■□□□ 1.59
LRCH3-208ENST00000443727 ATG9AQ7Z3C6 839 aa25■■□□□ 1.59
LRCH3-208ENST00000443727 TBC1D22AQ8WUA7 517 aa25■■□□□ 1.59
LRCH3-208ENST00000443727 LPIN2Q92539 896 aa25■■□□□ 1.59
LRCH3-208ENST00000443727 PRMT6Q96LA8 375 aaPredicted RBP25■■□□□ 1.59
LRCH3-208ENST00000443727 VEZTQ9HBM0 779 aa25■■□□□ 1.59
LRCH3-208ENST00000443727 CLRN2A0PK11 232 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 CA12O43570 354 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 FGFR2P21802 821 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 MOB2Q70IA6 237 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 ZIC5Q96T25 663 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 DEFB129Q9H1M3 183 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 PA2G4Q9UQ80 394 aaKnown RBP24.99■■□□□ 1.59
LRCH3-208ENST00000443727 TNNQ9UQP3 1299 aa24.99■■□□□ 1.59
LRCH3-208ENST00000443727 ZBED9Q6R2W3 1325 aa24.98■■□□□ 1.59
LRCH3-208ENST00000443727 FAM155AB1AL88 458 aaPredicted RBP24.98■■□□□ 1.59
LRCH3-208ENST00000443727 UBE2Q2LH0YL09 131 aa24.98■■□□□ 1.59
LRCH3-208ENST00000443727 SRGAP3O43295 1099 aa24.98■■□□□ 1.59
LRCH3-208ENST00000443727 IL15P40933 162 aaPredicted RBP24.98■■□□□ 1.59
LRCH3-208ENST00000443727 SERPINA10Q9UK55 444 aa24.98■■□□□ 1.59
LRCH3-208ENST00000443727 PAPPA2Q9BXP8 1791 aa24.98■■□□□ 1.59
LRCH3-208ENST00000443727 SLC10A3P09131 477 aa24.97■■□□□ 1.59
LRCH3-208ENST00000443727 KIF23Q02241 960 aaPredicted RBP24.97■■□□□ 1.59
LRCH3-208ENST00000443727 PRKG1Q13976 671 aa24.97■■□□□ 1.59
LRCH3-208ENST00000443727 ATP2B3Q16720 1220 aa24.97■■□□□ 1.59
LRCH3-208ENST00000443727 TSKSQ9UJT2 592 aa24.97■■□□□ 1.59
LRCH3-208ENST00000443727 GNAI2P04899 355 aa24.96■■□□□ 1.59
LRCH3-208ENST00000443727 ARMC9Q7Z3E5 817 aa24.96■■□□□ 1.59
LRCH3-208ENST00000443727 COPRSQ9NQ92 184 aa24.96■■□□□ 1.59
LRCH3-208ENST00000443727 FTSJ3Q8IY81 847 aaKnown RBP24.95■■□□□ 1.58
LRCH3-208ENST00000443727 GNL3LQ9NVN8 582 aaKnown RBP24.95■■□□□ 1.58
LRCH3-208ENST00000443727 PPP2R3BQ9Y5P8 575 aa24.95■■□□□ 1.58
LRCH3-208ENST00000443727 COL1A1P02452 1464 aaPredicted RBP24.95■■□□□ 1.58
LRCH3-208ENST00000443727 CRKP46108 304 aa24.94■■□□□ 1.58
LRCH3-208ENST00000443727 RASAL3Q86YV0 1011 aa24.94■■□□□ 1.58
LRCH3-208ENST00000443727 DZIP1LQ8IYY4 767 aaKnown RBP24.94■■□□□ 1.58
LRCH3-208ENST00000443727 TMEM57Q8N5G2 664 aa24.94■■□□□ 1.58
LRCH3-208ENST00000443727 CAPN15O75808 1086 aa24.93■■□□□ 1.58
LRCH3-208ENST00000443727 TNFAIP1Q13829 316 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms