RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 A0A1W2PP55 124 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 IGHA2P01877 340 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 GRIA4P48058 902 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 PIP4K2BP78356 416 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 ZMYM1Q5SVZ6 1142 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 TMEM130Q8N3G9 435 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 BSNDQ8WZ55 320 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 FAM129BQ96TA1 746 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 USP26Q9BXU7 913 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 BHLHE41Q9C0J9 482 aaPredicted RBP4.35□□□□□ -1.71
PTPRC-208ENST00000427110 NPHS2Q9NP85 383 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 IVNS1ABPQ9Y6Y0 642 aa4.35□□□□□ -1.71
PTPRC-208ENST00000427110 EIF1AYO14602 144 aaKnown RBP4.34□□□□□ -1.71
PTPRC-208ENST00000427110 C19orf57Q0VDD7 668 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 PDE3BQ13370 1112 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 IKBKEQ14164 716 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 PI16Q6UXB8 463 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 Q6ZS46 218 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 GALNT12Q8IXK2 581 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 DZIP1LQ8IYY4 767 aaKnown RBP4.34□□□□□ -1.71
PTPRC-208ENST00000427110 KLHL23Q8NBE8 558 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 TCF12Q99081 682 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 LIN7BQ9HAP6 207 aa4.34□□□□□ -1.71
PTPRC-208ENST00000427110 A0A096LPE4 126 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 A0A1W2PPZ6 126 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 CPNE3O75131 537 aaKnown RBP4.33□□□□□ -1.72
PTPRC-208ENST00000427110 DLGAP3O95886 979 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 H2AFB1P0C5Y9 115 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 H2AFB2P0C5Z0 115 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 ESRRAP11474 423 aaPredicted RBP4.33□□□□□ -1.72
PTPRC-208ENST00000427110 PRR23CQ6ZRP0 262 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 CCNJLQ8IV13 435 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 Q8N3U1 123 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 EHD4Q9H223 541 aa4.33□□□□□ -1.72
PTPRC-208ENST00000427110 GNEQ9Y223 722 aaKnown RBP4.33□□□□□ -1.72
PTPRC-208ENST00000427110 LOC100289279A0A1B0GTE1 492 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 SCO2A0A1W2PP80 73 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 GADD45BO75293 160 aaPredicted RBP4.32□□□□□ -1.72
PTPRC-208ENST00000427110 MAPK1P28482 360 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 PREPP48147 710 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 GSTM4Q03013 218 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 PCDH1Q08174 1060 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 ZNF423Q2M1K9 1284 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 XP32Q5T750 250 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 TMC7Q7Z402 723 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 ARMC10Q8N2F6 343 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 EPS8L3Q8TE67 593 aaKnown RBP4.32□□□□□ -1.72
PTPRC-208ENST00000427110 DCAF11Q8TEB1 546 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 CCDC74AQ96AQ1 378 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 RUSC1Q9BVN2 902 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 GZF1Q9H116 711 aaPredicted RBP4.32□□□□□ -1.72
PTPRC-208ENST00000427110 OSGEPQ9NPF4 335 aa4.32□□□□□ -1.72
PTPRC-208ENST00000427110 ECEL1O95672 775 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 CTSBP07858 339 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 FSTP19883 344 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 ARL4DP49703 201 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 ZNF157P51786 506 aaPredicted RBP4.31□□□□□ -1.72
PTPRC-208ENST00000427110 WNT8BQ93098 351 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 UTP4Q969X6 686 aaKnown RBP4.31□□□□□ -1.72
PTPRC-208ENST00000427110 CSRNP1Q96S65 589 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 SETDB2Q96T68 719 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 RBCK1Q9BYM8 510 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 DCTN4Q9UJW0 460 aa4.31□□□□□ -1.72
PTPRC-208ENST00000427110 DRD2P14416 443 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 GRM2Q14416 872 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 TMCO4Q5TGY1 634 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 KIAA0319Q5VV43 1072 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 FDX2Q6P4F2 183 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 FAM46AQ96IP4 442 aaKnown RBP4.3□□□□□ -1.72
PTPRC-208ENST00000427110 CITED4Q96RK1 184 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 CEP41Q9BYV8 373 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 RNF208Q9H0X6 261 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 CLEC4MQ9H2X3 399 aaPredicted RBP4.3□□□□□ -1.72
PTPRC-208ENST00000427110 ABCB6Q9NP58 842 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 RAXQ9Y2V3 346 aa4.3□□□□□ -1.72
PTPRC-208ENST00000427110 PNMA6FA0A0J9YX94 578 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 HMX2A2RU54 273 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 DHX15O43143 795 aaKnown RBP4.29□□□□□ -1.72
PTPRC-208ENST00000427110 SART1O43290 800 aaKnown RBP4.29□□□□□ -1.72
PTPRC-208ENST00000427110 NEFLP07196 543 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 BMP3P12645 472 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 MAOBP27338 520 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 SGO2Q562F6 1265 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 TRIM42Q8IWZ5 723 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 C12orf50Q8NA57 414 aaPredicted RBP4.29□□□□□ -1.72
PTPRC-208ENST00000427110 MYRFLQ96LU7 910 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 DMRTB1Q96MA1 342 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 TRIM56Q9BRZ2 755 aaKnown RBP4.29□□□□□ -1.72
PTPRC-208ENST00000427110 TMPRSS13Q9BYE2 586 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 NRSN2Q9GZP1 204 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 KCNF1Q9H3M0 494 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 ZNF576Q9H609 170 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 C7orf69Q9H7B7 122 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 STOML1Q9UBI4 398 aa4.29□□□□□ -1.72
PTPRC-208ENST00000427110 GAS2O43903 313 aaKnown RBP4.28□□□□□ -1.72
PTPRC-208ENST00000427110 MAPK8P45983 427 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 FCGRTP55899 365 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 FAAP100Q0VG06 881 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 DSC3Q14574 896 aa4.28□□□□□ -1.72
PTPRC-208ENST00000427110 NUTM2GQ5VZR2 741 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms