RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 POTEJP0CG39 1038 aa15.41■□□□□ 0.06
SKA1-203ENST00000417656 EAPPQ56P03 285 aaPredicted RBP15.41■□□□□ 0.06
SKA1-203ENST00000417656 TTLL5Q6EMB2 1281 aa15.41■□□□□ 0.06
SKA1-203ENST00000417656 FOXD4L1Q9NU39 408 aa15.41■□□□□ 0.06
SKA1-203ENST00000417656 AKAP2Q9Y2D5 859 aa15.41■□□□□ 0.06
SKA1-203ENST00000417656 PHKA1P46020 1223 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 TIMM10P62072 90 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 IRX6P78412 446 aaPredicted RBP15.4■□□□□ 0.06
SKA1-203ENST00000417656 CHAF1AQ13111 956 aaPredicted RBP15.4■□□□□ 0.06
SKA1-203ENST00000417656 TNNI3KQ59H18 835 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 CERS5Q8N5B7 392 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 AGBL3Q8NEM8 1001 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 EXOC6Q8TAG9 804 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 DPF2Q92785 391 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 GMLQ99445 158 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 CNOT7Q9UIV1 285 aaKnown RBP15.4■□□□□ 0.06
SKA1-203ENST00000417656 PCDHB15Q9Y5E8 787 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 FPGT-TNNI3KV9GXZ4 949 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 FAM205AQ6ZU69 1335 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 MYO3BQ8WXR4 1341 aa15.4■□□□□ 0.06
SKA1-203ENST00000417656 APBB1O00213 710 aa15.39■□□□□ 0.05
SKA1-203ENST00000417656 FRAT2O75474 233 aaPredicted RBP15.39■□□□□ 0.05
SKA1-203ENST00000417656 TOMM70O94826 608 aa15.39■□□□□ 0.05
SKA1-203ENST00000417656 ERC1Q8IUD2 1116 aa15.39■□□□□ 0.05
SKA1-203ENST00000417656 TRPM4Q8TD43 1214 aa15.39■□□□□ 0.05
SKA1-203ENST00000417656 XAGE2Q96GT9 111 aa15.39■□□□□ 0.05
SKA1-203ENST00000417656 NEUROD6Q96NK8 337 aa15.39■□□□□ 0.05
SKA1-203ENST00000417656 ADARB2Q9NS39 739 aaKnown RBP15.39■□□□□ 0.05
SKA1-203ENST00000417656 EGFRP00533 1210 aa15.38■□□□□ 0.05
SKA1-203ENST00000417656 HSP90AB4PQ58FF6 505 aa15.38■□□□□ 0.05
SKA1-203ENST00000417656 CCDC102BQ68D86 513 aa15.38■□□□□ 0.05
SKA1-203ENST00000417656 SAMD7Q7Z3H4 446 aa15.38■□□□□ 0.05
SKA1-203ENST00000417656 RBM46Q8TBY0 533 aaKnown RBP15.38■□□□□ 0.05
SKA1-203ENST00000417656 GPR108Q9NPR9 543 aa15.38■□□□□ 0.05
SKA1-203ENST00000417656 H7C1D1 291 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 USP17L8P0C7I0 530 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 KIF4BQ2VIQ3 1234 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 TBC1D10BQ4KMP7 808 aaPredicted RBP15.37■□□□□ 0.05
SKA1-203ENST00000417656 MFSD14BQ5SR56 506 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 CHRDL2Q6WN34 429 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 PNMA8AQ86V59 439 aaPredicted RBP15.37■□□□□ 0.05
SKA1-203ENST00000417656 LDHDQ86WU2 507 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 KIAA0825Q8IV33 1275 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 RHPN1Q8TCX5 695 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 DBNDD2Q9BQY9 259 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 IL1RAPL2Q9NP60 686 aa15.37■□□□□ 0.05
SKA1-203ENST00000417656 TLR7Q9NYK1 1049 aaKnown RBP15.37■□□□□ 0.05
SKA1-203ENST00000417656 F8W031 263 aaPredicted RBP15.36■□□□□ 0.05
SKA1-203ENST00000417656 ZNF280AP59817 542 aaPredicted RBP15.36■□□□□ 0.05
SKA1-203ENST00000417656 FKBP1AP62942 108 aaKnown RBP15.36■□□□□ 0.05
SKA1-203ENST00000417656 GORABQ5T7V8 394 aa15.36■□□□□ 0.05
SKA1-203ENST00000417656 USP50Q70EL3 339 aaPredicted RBP15.36■□□□□ 0.05
SKA1-203ENST00000417656 SMC1BQ8NDV3 1235 aa15.36■□□□□ 0.05
SKA1-203ENST00000417656 EAF2Q96CJ1 260 aaPredicted RBP15.36■□□□□ 0.05
SKA1-203ENST00000417656 KIF1BPQ96EK5 621 aa15.36■□□□□ 0.05
SKA1-203ENST00000417656 GNL3LQ9NVN8 582 aaKnown RBP15.36■□□□□ 0.05
SKA1-203ENST00000417656 HIRAP54198 1017 aaPredicted RBP15.35■□□□□ 0.05
SKA1-203ENST00000417656 RASGRF1Q13972 1273 aa15.35■□□□□ 0.05
SKA1-203ENST00000417656 RBM26Q5T8P6 1007 aaKnown RBP15.35■□□□□ 0.05
SKA1-203ENST00000417656 CHADLQ6NUI6 762 aa15.35■□□□□ 0.05
SKA1-203ENST00000417656 AACSQ86V21 672 aa15.35■□□□□ 0.05
SKA1-203ENST00000417656 CCDC8Q9H0W5 538 aaPredicted RBP15.35■□□□□ 0.05
SKA1-203ENST00000417656 BCL11AQ9H165 835 aa15.35■□□□□ 0.05
SKA1-203ENST00000417656 DBNLQ9UJU6 430 aaKnown RBP15.35■□□□□ 0.05
SKA1-203ENST00000417656 CLEC11AQ9Y240 323 aa15.35■□□□□ 0.05
SKA1-203ENST00000417656 ECM29Q5VYK3 1845 aa15.35■□□□□ 0.05
SKA1-203ENST00000417656 SEMA3EO15041 775 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 RAB11FIP3O75154 756 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 C1QTNF8P60827 252 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 GRIK5Q16478 980 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 MYOZ2Q9NPC6 264 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 DENND2AQ9ULE3 1009 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 MAST2Q6P0Q8 1798 aa15.34■□□□□ 0.05
SKA1-203ENST00000417656 AKAP11Q9UKA4 1901 aa15.33■□□□□ 0.05
SKA1-203ENST00000417656 ARID4AP29374 1257 aaPredicted RBP15.33■□□□□ 0.04
SKA1-203ENST00000417656 AAMPQ13685 434 aa15.33■□□□□ 0.04
SKA1-203ENST00000417656 MAP1SQ66K74 1059 aaPredicted RBP15.33■□□□□ 0.04
SKA1-203ENST00000417656 PI16Q6UXB8 463 aa15.33■□□□□ 0.04
SKA1-203ENST00000417656 OGFOD1Q8N543 542 aa15.33■□□□□ 0.04
SKA1-203ENST00000417656 TBC1D22AQ8WUA7 517 aa15.33■□□□□ 0.04
SKA1-203ENST00000417656 DCTPP1Q9H773 170 aa15.33■□□□□ 0.04
SKA1-203ENST00000417656 HDAC9Q9UKV0 1011 aa15.33■□□□□ 0.04
SKA1-203ENST00000417656 ASTN2O75129 1339 aaPredicted RBP15.33■□□□□ 0.04
SKA1-203ENST00000417656 SMARCA5O60264 1052 aaPredicted RBP15.32■□□□□ 0.04
SKA1-203ENST00000417656 FSTL1Q12841 308 aa15.32■□□□□ 0.04
SKA1-203ENST00000417656 SCARF1Q14162 830 aa15.32■□□□□ 0.04
SKA1-203ENST00000417656 TTC39AQ5SRH9 613 aa15.32■□□□□ 0.04
SKA1-203ENST00000417656 CLASRPQ8N2M8 674 aaKnown RBP15.32■□□□□ 0.04
SKA1-203ENST00000417656 WDR66Q8TBY9 1149 aa15.32■□□□□ 0.04
SKA1-203ENST00000417656 LRRCC1Q9C099 1032 aa15.32■□□□□ 0.04
SKA1-203ENST00000417656 TTF2Q9UNY4 1162 aaKnown RBP15.32■□□□□ 0.04
SKA1-203ENST00000417656 PCDHAC2Q9Y5I4 1007 aa15.32■□□□□ 0.04
SKA1-203ENST00000417656 PDS5AQ29RF7 1337 aaKnown RBP15.32■□□□□ 0.04
SKA1-203ENST00000417656 ZBTB22O15209 634 aa15.31■□□□□ 0.04
SKA1-203ENST00000417656 UQCRFS1P1P0C7P4 283 aa15.31■□□□□ 0.04
SKA1-203ENST00000417656 MCAMP43121 646 aa15.31■□□□□ 0.04
SKA1-203ENST00000417656 CCDC158Q5M9N0 1113 aa15.31■□□□□ 0.04
SKA1-203ENST00000417656 GGA3Q9NZ52 723 aa15.31■□□□□ 0.04
SKA1-203ENST00000417656 HMG20BQ9P0W2 317 aa15.31■□□□□ 0.04
SKA1-203ENST00000417656 SALL1Q9NSC2 1324 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms