RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 DEFB129Q9H1M3 183 aa16.48■□□□□ 0.23
LINC00339-202ENST00000416769 ECM29Q5VYK3 1845 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 MKI67P46013 3256 aaKnown RBP16.47■□□□□ 0.23
LINC00339-202ENST00000416769 IGF2BP3O00425 579 aaKnown RBP eCLIP16.47■□□□□ 0.23
LINC00339-202ENST00000416769 NF2P35240 595 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 GJA5P36382 358 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 ARMC9Q7Z3E5 817 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 APOBEC3FQ8IUX4 373 aaKnown RBP16.47■□□□□ 0.23
LINC00339-202ENST00000416769 CDAN1Q8IWY9 1227 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 ANKRD2Q9GZV1 360 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 OTOFQ9HC10 1997 aa16.47■□□□□ 0.23
LINC00339-202ENST00000416769 KIAA0100Q14667 2235 aaKnown RBP16.46■□□□□ 0.23
LINC00339-202ENST00000416769 CFAP100Q494V2 611 aa16.46■□□□□ 0.23
LINC00339-202ENST00000416769 LINS1Q8NG48 757 aa16.46■□□□□ 0.23
LINC00339-202ENST00000416769 PRMT6Q96LA8 375 aaPredicted RBP16.46■□□□□ 0.23
LINC00339-202ENST00000416769 SPINK5Q9NQ38 1064 aaPredicted RBP16.46■□□□□ 0.23
LINC00339-202ENST00000416769 CHMP3Q9Y3E7 222 aa16.46■□□□□ 0.23
LINC00339-202ENST00000416769 FKTNO75072 461 aa16.45■□□□□ 0.22
LINC00339-202ENST00000416769 DLGAP5Q15398 846 aa16.45■□□□□ 0.22
LINC00339-202ENST00000416769 CCDC27Q2M243 656 aa16.45■□□□□ 0.22
LINC00339-202ENST00000416769 NBPF12Q5TAG4 269 aaPredicted RBP16.45■□□□□ 0.22
LINC00339-202ENST00000416769 FBXO46Q6PJ61 603 aaPredicted RBP16.45■□□□□ 0.22
LINC00339-202ENST00000416769 WNK4Q96J92 1243 aa16.45■□□□□ 0.22
LINC00339-202ENST00000416769 CENPFP49454 3210 aa16.45■□□□□ 0.22
LINC00339-202ENST00000416769 ANKRD18BA2A2Z9 1011 aa16.44■□□□□ 0.22
LINC00339-202ENST00000416769 PLIN1O60240 522 aa16.44■□□□□ 0.22
LINC00339-202ENST00000416769 VAMP4O75379 141 aa16.44■□□□□ 0.22
LINC00339-202ENST00000416769 EXOSC9Q06265 439 aaKnown RBP16.44■□□□□ 0.22
LINC00339-202ENST00000416769 SREBF2Q12772 1141 aa16.44■□□□□ 0.22
LINC00339-202ENST00000416769 PRPF38BQ5VTL8 546 aaKnown RBP16.44■□□□□ 0.22
LINC00339-202ENST00000416769 IFNL1Q8IU54 200 aa16.44■□□□□ 0.22
LINC00339-202ENST00000416769 VEZTQ9HBM0 779 aa16.44■□□□□ 0.22
LINC00339-202ENST00000416769 POTEFA5A3E0 1075 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 SPDYE2BA6NHP3 402 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 SPDYE6P0CI01 402 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 GRIK5Q16478 980 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 PKN2Q16513 984 aaKnown RBP16.43■□□□□ 0.22
LINC00339-202ENST00000416769 BEND3Q5T5X7 828 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 LMBR1LQ6UX01 489 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 MYH16Q9H6N6 1097 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 LAMB1P07942 1786 aa16.43■□□□□ 0.22
LINC00339-202ENST00000416769 IL1R1P14778 569 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 MAP3K11Q16584 847 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 NOM1Q5C9Z4 860 aaKnown RBP16.42■□□□□ 0.22
LINC00339-202ENST00000416769 C15orf52Q6ZUT6 534 aaKnown RBP16.42■□□□□ 0.22
LINC00339-202ENST00000416769 CNKSR2Q8WXI2 1034 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 SLC10A4Q96EP9 437 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 CFHR5Q9BXR6 569 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 TRIM17Q9Y577 477 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 CACNA1FO60840 1977 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 BRCA2P51587 3418 aa16.42■□□□□ 0.22
LINC00339-202ENST00000416769 COL1A1P02452 1464 aaPredicted RBP16.42■□□□□ 0.22
LINC00339-202ENST00000416769 USP2O75604 605 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-202ENST00000416769 GYG1P46976 350 aa16.41■□□□□ 0.22
LINC00339-202ENST00000416769 IFIT5Q13325 482 aaKnown RBP16.41■□□□□ 0.22
LINC00339-202ENST00000416769 OTOP1Q7RTM1 612 aa16.41■□□□□ 0.22
LINC00339-202ENST00000416769 MTMR14Q8NCE2 650 aa16.41■□□□□ 0.22
LINC00339-202ENST00000416769 PTPN18Q99952 460 aa16.41■□□□□ 0.22
LINC00339-202ENST00000416769 PUS3Q9BZE2 481 aaKnown RBP16.41■□□□□ 0.22
LINC00339-202ENST00000416769 IL16Q14005 1332 aa16.41■□□□□ 0.22
LINC00339-202ENST00000416769 CRHR2Q13324 411 aa16.4■□□□□ 0.22
LINC00339-202ENST00000416769 RASA3Q14644 834 aa16.4■□□□□ 0.22
LINC00339-202ENST00000416769 FAM9BQ8IZU0 186 aa16.4■□□□□ 0.22
LINC00339-202ENST00000416769 CD99L2Q8TCZ2 262 aa16.4■□□□□ 0.22
LINC00339-202ENST00000416769 CHMP4AQ9BY43 222 aa16.4■□□□□ 0.22
LINC00339-202ENST00000416769 ZSWIM8A7E2V4 1837 aa16.4■□□□□ 0.22
LINC00339-202ENST00000416769 MANSC4A6NHS7 340 aaPredicted RBP16.39■□□□□ 0.21
LINC00339-202ENST00000416769 RBM5P52756 815 aaKnown RBP eCLIP16.39■□□□□ 0.21
LINC00339-202ENST00000416769 ZNF804AQ7Z570 1209 aa16.39■□□□□ 0.21
LINC00339-202ENST00000416769 KAZALD1Q96I82 304 aa16.39■□□□□ 0.21
LINC00339-202ENST00000416769 TDRD3Q9H7E2 651 aaKnown RBP16.39■□□□□ 0.21
LINC00339-202ENST00000416769 ELP3Q9H9T3 547 aa16.39■□□□□ 0.21
LINC00339-202ENST00000416769 SUCLG2Q96I99 432 aa16.38■□□□□ 0.21
LINC00339-202ENST00000416769 ZNF70Q9UC06 446 aaPredicted RBP16.38■□□□□ 0.21
LINC00339-202ENST00000416769 IQSEC3Q9UPP2 1182 aaPredicted RBP16.38■□□□□ 0.21
LINC00339-202ENST00000416769 ARAP2Q8WZ64 1704 aa16.37■□□□□ 0.21
LINC00339-202ENST00000416769 GRM8O00222 908 aa16.37■□□□□ 0.21
LINC00339-202ENST00000416769 PPP1R12BO60237 982 aaPredicted RBP16.37■□□□□ 0.21
LINC00339-202ENST00000416769 ZBTB48P10074 688 aaPredicted RBP16.37■□□□□ 0.21
LINC00339-202ENST00000416769 MFSD14BQ5SR56 506 aa16.37■□□□□ 0.21
LINC00339-202ENST00000416769 LDHAL6AQ6ZMR3 332 aa16.37■□□□□ 0.21
LINC00339-202ENST00000416769 TEPSINQ96N21 525 aa16.37■□□□□ 0.21
LINC00339-202ENST00000416769 CNNM1Q9NRU3 951 aa16.37■□□□□ 0.21
LINC00339-202ENST00000416769 TCP10L2B9ZVM9 353 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 MMP14P50281 582 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 CACNB3P54284 484 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 SPDYE2Q495Y8 402 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 TDRD7Q8NHU6 1098 aaKnown RBP16.36■□□□□ 0.21
LINC00339-202ENST00000416769 FAM84BQ96KN1 310 aaPredicted RBP16.36■□□□□ 0.21
LINC00339-202ENST00000416769 TMEM39BQ9GZU3 492 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 TTF2Q9UNY4 1162 aaKnown RBP16.36■□□□□ 0.21
LINC00339-202ENST00000416769 PPP2R3BQ9Y5P8 575 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 FAM205AQ6ZU69 1335 aa16.36■□□□□ 0.21
LINC00339-202ENST00000416769 MYO1BO43795 1136 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 ALDH1A1P00352 501 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 FKBP1AP62942 108 aaKnown RBP16.35■□□□□ 0.21
LINC00339-202ENST00000416769 CCDC57Q2TAC2 916 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 SUPT20HL1Q3ZLR7 823 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 TAF7LQ5H9L4 462 aa16.35■□□□□ 0.21
LINC00339-202ENST00000416769 SLC4A10Q6U841 1118 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms