RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 HIBADHP31937 336 aaKnown RBP23.85■■□□□ 1.41
SF3A1-202ENST00000411423 FBXO33Q7Z6M2 555 aa23.85■■□□□ 1.41
SF3A1-202ENST00000411423 TMEM57Q8N5G2 664 aa23.85■■□□□ 1.41
SF3A1-202ENST00000411423 CDCA5Q96FF9 252 aa23.85■■□□□ 1.41
SF3A1-202ENST00000411423 SIL1Q9H173 461 aa23.85■■□□□ 1.41
SF3A1-202ENST00000411423 AOX1Q06278 1338 aa23.84■■□□□ 1.41
SF3A1-202ENST00000411423 FAM205AQ6ZU69 1335 aa23.84■■□□□ 1.41
SF3A1-202ENST00000411423 F8W031 263 aaPredicted RBP23.84■■□□□ 1.41
SF3A1-202ENST00000411423 SULF1Q8IWU6 871 aa23.84■■□□□ 1.41
SF3A1-202ENST00000411423 OGFOD1Q8N543 542 aa23.84■■□□□ 1.41
SF3A1-202ENST00000411423 CAPNS2Q96L46 248 aa23.84■■□□□ 1.41
SF3A1-202ENST00000411423 IQSEC3Q9UPP2 1182 aaPredicted RBP23.84■■□□□ 1.41
SF3A1-202ENST00000411423 PITPNM2Q9BZ72 1349 aa23.84■■□□□ 1.41
SF3A1-202ENST00000411423 FKBP1AP62942 108 aaKnown RBP23.83■■□□□ 1.41
SF3A1-202ENST00000411423 GRIK5Q16478 980 aa23.83■■□□□ 1.41
SF3A1-202ENST00000411423 PRAMEF18Q5VWM3 479 aa23.83■■□□□ 1.41
SF3A1-202ENST00000411423 AOC2O75106 756 aa23.82■■□□□ 1.4
SF3A1-202ENST00000411423 BCAMP50895 628 aa23.82■■□□□ 1.4
SF3A1-202ENST00000411423 GRM1Q13255 1194 aa23.82■■□□□ 1.4
SF3A1-202ENST00000411423 ZKSCAN2Q63HK3 967 aa23.82■■□□□ 1.4
SF3A1-202ENST00000411423 PAXIP1Q6ZW49 1069 aaPredicted RBP23.82■■□□□ 1.4
SF3A1-202ENST00000411423 RLBP1P12271 317 aa23.81■■□□□ 1.4
SF3A1-202ENST00000411423 HDAC9Q9UKV0 1011 aa23.81■■□□□ 1.4
SF3A1-202ENST00000411423 FOXN1O15353 648 aa23.8■■□□□ 1.4
SF3A1-202ENST00000411423 GNAI3P08754 354 aa23.8■■□□□ 1.4
SF3A1-202ENST00000411423 PUM3Q15397 648 aaKnown RBP23.8■■□□□ 1.4
SF3A1-202ENST00000411423 ARAP2Q8WZ64 1704 aa23.8■■□□□ 1.4
SF3A1-202ENST00000411423 GBA2Q9HCG7 927 aaPredicted RBP23.8■■□□□ 1.4
SF3A1-202ENST00000411423 CIAO1O76071 339 aa23.79■■□□□ 1.4
SF3A1-202ENST00000411423 COL13A1Q5TAT6 717 aaPredicted RBP23.79■■□□□ 1.4
SF3A1-202ENST00000411423 HHIPL1Q96JK4 782 aa23.79■■□□□ 1.4
SF3A1-202ENST00000411423 COPRSQ9NQ92 184 aa23.79■■□□□ 1.4
SF3A1-202ENST00000411423 WBP1LQ9NX94 342 aa23.79■■□□□ 1.4
SF3A1-202ENST00000411423 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.79■■□□□ 1.4
SF3A1-202ENST00000411423 MMP14P50281 582 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 HUNKP57058 714 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 MTX1Q13505 466 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 CFAP100Q494V2 611 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 MFSD14BQ5SR56 506 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 MTMR14Q8NCE2 650 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 ZIC5Q96T25 663 aa23.78■■□□□ 1.4
SF3A1-202ENST00000411423 COL1A1P02452 1464 aaPredicted RBP23.78■■□□□ 1.4
SF3A1-202ENST00000411423 CHAF1AQ13111 956 aaPredicted RBP23.77■■□□□ 1.4
SF3A1-202ENST00000411423 MOB2Q70IA6 237 aa23.77■■□□□ 1.4
SF3A1-202ENST00000411423 PRMT6Q96LA8 375 aaPredicted RBP23.77■■□□□ 1.4
SF3A1-202ENST00000411423 FBXO3Q9UK99 471 aa23.77■■□□□ 1.4
SF3A1-202ENST00000411423 PNMA6EA0A0J9YXQ4 647 aa23.76■■□□□ 1.39
SF3A1-202ENST00000411423 SRGAP3O43295 1099 aa23.76■■□□□ 1.39
SF3A1-202ENST00000411423 ECE1P42892 770 aa23.76■■□□□ 1.39
SF3A1-202ENST00000411423 DLGAP5Q15398 846 aa23.76■■□□□ 1.39
SF3A1-202ENST00000411423 CAVIN4Q5BKX8 364 aa23.76■■□□□ 1.39
SF3A1-202ENST00000411423 LPIN2Q92539 896 aa23.76■■□□□ 1.39
SF3A1-202ENST00000411423 SPDYE2BA6NHP3 402 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 FAM155AB1AL88 458 aaPredicted RBP23.75■■□□□ 1.39
SF3A1-202ENST00000411423 GNAI2P04899 355 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 IFIT1P09914 478 aaKnown RBP23.75■■□□□ 1.39
SF3A1-202ENST00000411423 SPDYE6P0CI01 402 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 VPS37DQ86XT2 251 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 C2orf69Q8N8R5 385 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 HDAC5Q9UQL6 1122 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 ECM29Q5VYK3 1845 aa23.75■■□□□ 1.39
SF3A1-202ENST00000411423 CLRN2A0PK11 232 aa23.74■■□□□ 1.39
SF3A1-202ENST00000411423 SLC5A1P13866 664 aa23.74■■□□□ 1.39
SF3A1-202ENST00000411423 IL15P40933 162 aaPredicted RBP23.74■■□□□ 1.39
SF3A1-202ENST00000411423 ATP2B3Q16720 1220 aa23.74■■□□□ 1.39
SF3A1-202ENST00000411423 DZIP1LQ8IYY4 767 aaKnown RBP23.74■■□□□ 1.39
SF3A1-202ENST00000411423 CEP126Q9P2H0 1117 aa23.74■■□□□ 1.39
SF3A1-202ENST00000411423 TTF2Q9UNY4 1162 aaKnown RBP23.74■■□□□ 1.39
SF3A1-202ENST00000411423 PAPPA2Q9BXP8 1791 aa23.73■■□□□ 1.39
SF3A1-202ENST00000411423 ADORA1P30542 326 aa23.73■■□□□ 1.39
SF3A1-202ENST00000411423 RGMBQ6NW40 437 aa23.73■■□□□ 1.39
SF3A1-202ENST00000411423 C1orf115Q9H7X2 142 aa23.73■■□□□ 1.39
SF3A1-202ENST00000411423 SSC5DA1L4H1 1573 aa23.71■■□□□ 1.39
SF3A1-202ENST00000411423 APOBEC3FQ8IUX4 373 aaKnown RBP23.71■■□□□ 1.39
SF3A1-202ENST00000411423 FZD1Q9UP38 647 aa23.71■■□□□ 1.39
SF3A1-202ENST00000411423 ZBTB7BO15156 539 aaPredicted RBP23.7■■□□□ 1.38
SF3A1-202ENST00000411423 FRAT2O75474 233 aaPredicted RBP23.7■■□□□ 1.38
SF3A1-202ENST00000411423 MAP2K2P36507 400 aa23.7■■□□□ 1.38
SF3A1-202ENST00000411423 PHKA1P46020 1223 aa23.7■■□□□ 1.38
SF3A1-202ENST00000411423 TFCP2Q12800 502 aa23.7■■□□□ 1.38
SF3A1-202ENST00000411423 PANK1Q8TE04 598 aa23.7■■□□□ 1.38
SF3A1-202ENST00000411423 SERPINA10Q9UK55 444 aa23.7■■□□□ 1.38
SF3A1-202ENST00000411423 UBE2Q2LH0YL09 131 aa23.69■■□□□ 1.38
SF3A1-202ENST00000411423 HSPA8P11142 646 aaKnown RBP23.69■■□□□ 1.38
SF3A1-202ENST00000411423 CRKP46108 304 aa23.69■■□□□ 1.38
SF3A1-202ENST00000411423 RBM5P52756 815 aaKnown RBP eCLIP23.69■■□□□ 1.38
SF3A1-202ENST00000411423 TIMM10P62072 90 aa23.69■■□□□ 1.38
SF3A1-202ENST00000411423 MAP2K1Q02750 393 aaPredicted RBP23.69■■□□□ 1.38
SF3A1-202ENST00000411423 ITPRIPQ8IWB1 547 aa23.69■■□□□ 1.38
SF3A1-202ENST00000411423 FTSJ3Q8IY81 847 aaKnown RBP23.69■■□□□ 1.38
SF3A1-202ENST00000411423 DEFB129Q9H1M3 183 aa23.69■■□□□ 1.38
SF3A1-202ENST00000411423 ZNF157P51786 506 aaPredicted RBP23.68■■□□□ 1.38
SF3A1-202ENST00000411423 POLA2Q14181 598 aa23.68■■□□□ 1.38
SF3A1-202ENST00000411423 TDRD3Q9H7E2 651 aaKnown RBP23.68■■□□□ 1.38
SF3A1-202ENST00000411423 MYH13Q9UKX3 1938 aa23.68■■□□□ 1.38
SF3A1-202ENST00000411423 SLC10A3P09131 477 aa23.67■■□□□ 1.38
SF3A1-202ENST00000411423 PRKG1Q13976 671 aa23.67■■□□□ 1.38
SF3A1-202ENST00000411423 SPDYE2Q495Y8 402 aa23.67■■□□□ 1.38
SF3A1-202ENST00000411423 RASAL3Q86YV0 1011 aa23.67■■□□□ 1.38
SF3A1-202ENST00000411423 TBC1D22AQ8WUA7 517 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 657.3 ms