RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 VIL1P09327 827 aaKnown RBP35.96■■■■□ 3.35
USP42-202ENST00000404008 TTC39AQ5SRH9 613 aa35.96■■■■□ 3.35
USP42-202ENST00000404008 DACT2Q5SW24 774 aa35.96■■■■□ 3.35
USP42-202ENST00000404008 FBXW7Q969H0 707 aa35.96■■■■□ 3.35
USP42-202ENST00000404008 GJA3Q9Y6H8 435 aa35.96■■■■□ 3.35
USP42-202ENST00000404008 DDNO94850 711 aaPredicted RBP35.95■■■■□ 3.35
USP42-202ENST00000404008 UQCRFS1P1P0C7P4 283 aa35.95■■■■□ 3.35
USP42-202ENST00000404008 RASGRF1Q13972 1273 aa35.95■■■■□ 3.35
USP42-202ENST00000404008 ZNF512BQ96KM6 892 aaPredicted RBP35.95■■■■□ 3.35
USP42-202ENST00000404008 CHD1LQ86WJ1 897 aa35.94■■■■□ 3.34
USP42-202ENST00000404008 WDR90Q96KV7 1748 aa35.94■■■■□ 3.34
USP42-202ENST00000404008 DENND2AQ9ULE3 1009 aa35.94■■■■□ 3.34
USP42-202ENST00000404008 JAG2Q9Y219 1238 aa35.94■■■■□ 3.34
USP42-202ENST00000404008 C16orf71Q8IYS4 520 aaPredicted RBP35.93■■■■□ 3.34
USP42-202ENST00000404008 PPP4R2Q9NY27 417 aa35.93■■■■□ 3.34
USP42-202ENST00000404008 PDS5AQ29RF7 1337 aaKnown RBP35.92■■■■□ 3.34
USP42-202ENST00000404008 RSBN1LQ6PCB5 846 aaPredicted RBP35.92■■■■□ 3.34
USP42-202ENST00000404008 LNPKQ9C0E8 428 aa35.92■■■■□ 3.34
USP42-202ENST00000404008 CHAF1AQ13111 956 aaPredicted RBP35.91■■■■□ 3.34
USP42-202ENST00000404008 SCARF1Q14162 830 aa35.91■■■■□ 3.34
USP42-202ENST00000404008 CENPQQ7L2Z9 268 aaPredicted RBP35.91■■■■□ 3.34
USP42-202ENST00000404008 MXD3Q9BW11 206 aa35.91■■■■□ 3.34
USP42-202ENST00000404008 MCAMP43121 646 aa35.9■■■■□ 3.34
USP42-202ENST00000404008 HMG20BQ9P0W2 317 aa35.9■■■■□ 3.34
USP42-202ENST00000404008 ZBTB12Q9Y330 459 aaPredicted RBP35.9■■■■□ 3.34
USP42-202ENST00000404008 FKBP1AP62942 108 aaKnown RBP35.89■■■■□ 3.34
USP42-202ENST00000404008 OTUD7AQ8TE49 926 aaPredicted RBP35.89■■■■□ 3.34
USP42-202ENST00000404008 SCN4AP35499 1836 aa35.89■■■■□ 3.34
USP42-202ENST00000404008 MYO3BQ8WXR4 1341 aa35.89■■■■□ 3.34
USP42-202ENST00000404008 SALL3Q9BXA9 1300 aa35.89■■■■□ 3.34
USP42-202ENST00000404008 YY1P25490 414 aa35.89■■■■□ 3.34
USP42-202ENST00000404008 GMPSP49915 693 aaPredicted RBP35.89■■■■□ 3.34
USP42-202ENST00000404008 SPATA5Q8NB90 893 aa35.89■■■■□ 3.34
USP42-202ENST00000404008 L3MBTL3Q96JM7 780 aaPredicted RBP35.89■■■■□ 3.34
USP42-202ENST00000404008 RPS12P25398 132 aaKnown RBP35.88■■■■□ 3.33
USP42-202ENST00000404008 PI16Q6UXB8 463 aa35.88■■■■□ 3.33
USP42-202ENST00000404008 CERS5Q8N5B7 392 aa35.88■■■■□ 3.33
USP42-202ENST00000404008 GMLQ99445 158 aa35.88■■■■□ 3.33
USP42-202ENST00000404008 MFSD14BQ5SR56 506 aa35.87■■■■□ 3.33
USP42-202ENST00000404008 AGBL3Q8NEM8 1001 aa35.87■■■■□ 3.33
USP42-202ENST00000404008 WDR66Q8TBY9 1149 aa35.87■■■■□ 3.33
USP42-202ENST00000404008 TBC1D22AQ8WUA7 517 aa35.87■■■■□ 3.33
USP42-202ENST00000404008 ECHDC1Q9NTX5 307 aa35.87■■■■□ 3.33
USP42-202ENST00000404008 SCNN1DP51172 638 aa35.86■■■■□ 3.33
USP42-202ENST00000404008 PPIL4Q8WUA2 492 aaKnown RBP eCLIP35.86■■■■□ 3.33
USP42-202ENST00000404008 GPATCH3Q96I76 525 aa35.86■■■■□ 3.33
USP42-202ENST00000404008 ATP5JP18859 108 aa35.85■■■■□ 3.33
USP42-202ENST00000404008 DPF2Q92785 391 aa35.85■■■■□ 3.33
USP42-202ENST00000404008 SALL1Q9NSC2 1324 aa35.84■■■■□ 3.33
USP42-202ENST00000404008 MX1P20591 662 aa35.84■■■■□ 3.33
USP42-202ENST00000404008 SNRKQ9NRH2 765 aa35.84■■■■□ 3.33
USP42-202ENST00000404008 TTC41PQ6P2S7 1318 aa35.83■■■■□ 3.33
USP42-202ENST00000404008 ZNF526Q8TF50 670 aaPredicted RBP35.83■■■■□ 3.33
USP42-202ENST00000404008 GPRC5DQ9NZD1 345 aa35.82■■■■□ 3.32
USP42-202ENST00000404008 MYO5AQ9Y4I1 1855 aaKnown RBP35.82■■■■□ 3.32
USP42-202ENST00000404008 TSHZ3Q63HK5 1081 aa35.81■■■■□ 3.32
USP42-202ENST00000404008 ZAP70P43403 619 aa35.8■■■■□ 3.32
USP42-202ENST00000404008 STAP2Q9UGK3 403 aa35.8■■■■□ 3.32
USP42-202ENST00000404008 DOCK2Q92608 1830 aa35.8■■■■□ 3.32
USP42-202ENST00000404008 POTECB2RU33 542 aa35.79■■■■□ 3.32
USP42-202ENST00000404008 GRIK5Q16478 980 aa35.79■■■■□ 3.32
USP42-202ENST00000404008 KIAA0825Q8IV33 1275 aa35.79■■■■□ 3.32
USP42-202ENST00000404008 ZGPATQ8N5A5 531 aaKnown RBP35.79■■■■□ 3.32
USP42-202ENST00000404008 CNOT7Q9UIV1 285 aaKnown RBP35.79■■■■□ 3.32
USP42-202ENST00000404008 CYP2E1P05181 493 aaPredicted RBP35.78■■■■□ 3.32
USP42-202ENST00000404008 LMOD1P29536 600 aaPredicted RBP35.78■■■■□ 3.32
USP42-202ENST00000404008 BOLA2Q9H3K6 86 aa35.78■■■■□ 3.32
USP42-202ENST00000404008 SUGT1Q9Y2Z0 365 aa35.78■■■■□ 3.32
USP42-202ENST00000404008 NDUFB9Q9Y6M9 179 aa35.78■■■■□ 3.32
USP42-202ENST00000404008 USP17L8P0C7I0 530 aa35.77■■■■□ 3.32
USP42-202ENST00000404008 PDE4AP27815 886 aa35.77■■■■□ 3.32
USP42-202ENST00000404008 PDE1AP54750 535 aa35.77■■■■□ 3.32
USP42-202ENST00000404008 MICALL2Q8IY33 904 aa35.77■■■■□ 3.32
USP42-202ENST00000404008 PI4K2BQ8TCG2 481 aa35.77■■■■□ 3.32
USP42-202ENST00000404008 SHTN1A0MZ66 631 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 IQCA1LA6NCM1 817 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 TBC1D9Q6ZT07 1266 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 HAUS7Q99871 368 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 RRAGCQ9HB90 399 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 HACL1Q9UJ83 578 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 MAST2Q6P0Q8 1798 aa35.76■■■■□ 3.32
USP42-202ENST00000404008 F8W031 263 aaPredicted RBP35.76■■■■□ 3.31
USP42-202ENST00000404008 ERC2O15083 957 aa35.76■■■■□ 3.31
USP42-202ENST00000404008 EPS15P42566 896 aa35.76■■■■□ 3.31
USP42-202ENST00000404008 ZNF280AP59817 542 aaPredicted RBP35.76■■■■□ 3.31
USP42-202ENST00000404008 PLEKHM2Q8IWE5 1019 aa35.76■■■■□ 3.31
USP42-202ENST00000404008 NMRK2Q9NPI5 230 aa35.76■■■■□ 3.31
USP42-202ENST00000404008 ABCF2Q9UG63 623 aa35.76■■■■□ 3.31
USP42-202ENST00000404008 ADAMTSL1Q8N6G6 1762 aa35.75■■■■□ 3.31
USP42-202ENST00000404008 PRDX5P30044 214 aa35.75■■■■□ 3.31
USP42-202ENST00000404008 DNAJC2Q99543 621 aaKnown RBP35.75■■■■□ 3.31
USP42-202ENST00000404008 TTF2Q9UNY4 1162 aaKnown RBP35.75■■■■□ 3.31
USP42-202ENST00000404008 GLRX3O76003 335 aaKnown RBP35.74■■■■□ 3.31
USP42-202ENST00000404008 LDHBP07195 334 aaKnown RBP35.74■■■■□ 3.31
USP42-202ENST00000404008 MMP14P50281 582 aa35.74■■■■□ 3.31
USP42-202ENST00000404008 OGFOD1Q8N543 542 aa35.74■■■■□ 3.31
USP42-202ENST00000404008 GPBP1L1Q9HC44 474 aaPredicted RBP35.74■■■■□ 3.31
USP42-202ENST00000404008 H7C1D1 291 aa35.73■■■■□ 3.31
USP42-202ENST00000404008 VEGFAP15692 232 aaPredicted RBP35.73■■■■□ 3.31
USP42-202ENST00000404008 SPTY2D1Q68D10 685 aaPredicted RBP35.73■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms