RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CHMP3Q9Y3E7 222 aa36.13■■■■□ 3.37
HMGB1-205ENST00000399494 MKRN3Q13064 507 aaKnown RBP36.12■■■■□ 3.37
HMGB1-205ENST00000399494 ZNF296Q8WUU4 475 aaPredicted RBP36.11■■■■□ 3.37
HMGB1-205ENST00000399494 DEFB129Q9H1M3 183 aa36.11■■■■□ 3.37
HMGB1-205ENST00000399494 ZNF804AQ7Z570 1209 aa36.1■■■■□ 3.37
HMGB1-205ENST00000399494 ZNF594Q96JF6 807 aaPredicted RBP36.1■■■■□ 3.37
HMGB1-205ENST00000399494 TNRC18O15417 2968 aaPredicted RBP36.09■■■■□ 3.37
HMGB1-205ENST00000399494 SOX10P56693 466 aa36.09■■■■□ 3.37
HMGB1-205ENST00000399494 ANGEL1Q9UNK9 670 aaKnown RBP36.09■■■■□ 3.37
HMGB1-205ENST00000399494 PCDHAC2Q9Y5I4 1007 aa36.09■■■■□ 3.37
HMGB1-205ENST00000399494 GRM8O00222 908 aa36.08■■■■□ 3.37
HMGB1-205ENST00000399494 LDHAL6AQ6ZMR3 332 aa36.08■■■■□ 3.37
HMGB1-205ENST00000399494 FZD1Q9UP38 647 aa36.08■■■■□ 3.37
HMGB1-205ENST00000399494 FKBP1AP62942 108 aaKnown RBP36.07■■■■□ 3.36
HMGB1-205ENST00000399494 SREBF2Q12772 1141 aa36.07■■■■□ 3.36
HMGB1-205ENST00000399494 CCDC57Q2TAC2 916 aa36.07■■■■□ 3.36
HMGB1-205ENST00000399494 NOM1Q5C9Z4 860 aaKnown RBP36.07■■■■□ 3.36
HMGB1-205ENST00000399494 SPRYD7Q5W111 196 aa36.07■■■■□ 3.36
HMGB1-205ENST00000399494 GPR25O00155 361 aa36.06■■■■□ 3.36
HMGB1-205ENST00000399494 PKN2Q16513 984 aaKnown RBP36.06■■■■□ 3.36
HMGB1-205ENST00000399494 COL1A1P02452 1464 aaPredicted RBP36.05■■■■□ 3.36
HMGB1-205ENST00000399494 F8W031 263 aaPredicted RBP36.05■■■■□ 3.36
HMGB1-205ENST00000399494 PLIN1O60240 522 aa36.05■■■■□ 3.36
HMGB1-205ENST00000399494 SLC34A2O95436 690 aa36.05■■■■□ 3.36
HMGB1-205ENST00000399494 MAP3K11Q16584 847 aa36.05■■■■□ 3.36
HMGB1-205ENST00000399494 CFAP100Q494V2 611 aa36.05■■■■□ 3.36
HMGB1-205ENST00000399494 PRMT6Q96LA8 375 aaPredicted RBP36.05■■■■□ 3.36
HMGB1-205ENST00000399494 CFHR5Q9BXR6 569 aa36.05■■■■□ 3.36
HMGB1-205ENST00000399494 HPS5Q9UPZ3 1129 aa36.05■■■■□ 3.36
HMGB1-205ENST00000399494 A0A1B0GUL6 1792 aa36.04■■■■□ 3.36
HMGB1-205ENST00000399494 C9orf78Q9NZ63 289 aaPredicted RBP36.04■■■■□ 3.36
HMGB1-205ENST00000399494 SLC10A4Q96EP9 437 aa36.03■■■■□ 3.36
HMGB1-205ENST00000399494 R3HDMLQ9H3Y0 253 aa36.03■■■■□ 3.36
HMGB1-205ENST00000399494 CNNM1Q9NRU3 951 aa36.03■■■■□ 3.36
HMGB1-205ENST00000399494 PPP2R3BQ9Y5P8 575 aa36.03■■■■□ 3.36
HMGB1-205ENST00000399494 SPDYE2BA6NHP3 402 aa36.02■■■■□ 3.36
HMGB1-205ENST00000399494 E9PSI1 815 aa36.02■■■■□ 3.36
HMGB1-205ENST00000399494 ALDH1L1O75891 902 aa36.02■■■■□ 3.36
HMGB1-205ENST00000399494 SPDYE6P0CI01 402 aa36.02■■■■□ 3.36
HMGB1-205ENST00000399494 TAF7LQ5H9L4 462 aa36.02■■■■□ 3.36
HMGB1-205ENST00000399494 JAG2Q9Y219 1238 aa36.02■■■■□ 3.36
HMGB1-205ENST00000399494 CLRN2A0PK11 232 aa36■■■■□ 3.35
HMGB1-205ENST00000399494 MYO1BO43795 1136 aa36■■■■□ 3.35
HMGB1-205ENST00000399494 AOX1Q06278 1338 aa36■■■■□ 3.35
HMGB1-205ENST00000399494 SRCIN1Q9C0H9 1055 aa35.99■■■■□ 3.35
HMGB1-205ENST00000399494 SSC5DA1L4H1 1573 aa35.98■■■■□ 3.35
HMGB1-205ENST00000399494 PPP1R12BO60237 982 aaPredicted RBP35.98■■■■□ 3.35
HMGB1-205ENST00000399494 INHBEP58166 350 aa35.98■■■■□ 3.35
HMGB1-205ENST00000399494 SUPT20HL1Q3ZLR7 823 aa35.98■■■■□ 3.35
HMGB1-205ENST00000399494 SLC4A10Q6U841 1118 aa35.98■■■■□ 3.35
HMGB1-205ENST00000399494 FAM205AQ6ZU69 1335 aa35.98■■■■□ 3.35
HMGB1-205ENST00000399494 FKTNO75072 461 aa35.97■■■■□ 3.35
HMGB1-205ENST00000399494 UBE4AQ14139 1066 aa35.97■■■■□ 3.35
HMGB1-205ENST00000399494 TDRD7Q8NHU6 1098 aaKnown RBP35.97■■■■□ 3.35
HMGB1-205ENST00000399494 KAZALD1Q96I82 304 aa35.97■■■■□ 3.35
HMGB1-205ENST00000399494 CLMNQ96JQ2 1002 aa35.97■■■■□ 3.35
HMGB1-205ENST00000399494 MANSC4A6NHS7 340 aaPredicted RBP35.96■■■■□ 3.35
HMGB1-205ENST00000399494 UNCXA6NJT0 531 aa35.96■■■■□ 3.35
HMGB1-205ENST00000399494 NBPF12Q5TAG4 269 aaPredicted RBP35.96■■■■□ 3.35
HMGB1-205ENST00000399494 VEZTQ9HBM0 779 aa35.96■■■■□ 3.35
HMGB1-205ENST00000399494 ECM29Q5VYK3 1845 aa35.96■■■■□ 3.35
HMGB1-205ENST00000399494 ALDH1A1P00352 501 aa35.95■■■■□ 3.35
HMGB1-205ENST00000399494 RBM5P52756 815 aaKnown RBP eCLIP35.95■■■■□ 3.35
HMGB1-205ENST00000399494 SLFN5Q08AF3 891 aa35.95■■■■□ 3.35
HMGB1-205ENST00000399494 SUCLG2Q96I99 432 aa35.95■■■■□ 3.35
HMGB1-205ENST00000399494 FAM84BQ96KN1 310 aaPredicted RBP35.95■■■■□ 3.35
HMGB1-205ENST00000399494 PUS3Q9BZE2 481 aaKnown RBP35.95■■■■□ 3.35
HMGB1-205ENST00000399494 ZBTB4Q9P1Z0 1013 aaPredicted RBP35.95■■■■□ 3.35
HMGB1-205ENST00000399494 ZBTB48P10074 688 aaPredicted RBP35.94■■■■□ 3.34
HMGB1-205ENST00000399494 WNK4Q96J92 1243 aa35.94■■■■□ 3.34
HMGB1-205ENST00000399494 USP2O75604 605 aaPredicted RBP35.93■■■■□ 3.34
HMGB1-205ENST00000399494 HIBADHP31937 336 aaKnown RBP35.93■■■■□ 3.34
HMGB1-205ENST00000399494 GYG1P46976 350 aa35.93■■■■□ 3.34
HMGB1-205ENST00000399494 IFNL1Q8IU54 200 aa35.93■■■■□ 3.34
HMGB1-205ENST00000399494 NBPF7P0C2Y1 421 aaPredicted RBP35.92■■■■□ 3.34
HMGB1-205ENST00000399494 HNRNPUQ00839 825 aaKnown RBP eCLIP35.92■■■■□ 3.34
HMGB1-205ENST00000399494 RASA3Q14644 834 aa35.92■■■■□ 3.34
HMGB1-205ENST00000399494 FBXO46Q6PJ61 603 aaPredicted RBP35.92■■■■□ 3.34
HMGB1-205ENST00000399494 CDCA7LQ96GN5 454 aa35.92■■■■□ 3.34
HMGB1-205ENST00000399494 RIPOR2Q9Y4F9 1068 aa35.92■■■■□ 3.34
HMGB1-205ENST00000399494 MFSD14BQ5SR56 506 aa35.91■■■■□ 3.34
HMGB1-205ENST00000399494 UTYO14607 1347 aa35.9■■■■□ 3.34
HMGB1-205ENST00000399494 SERPINA10Q9UK55 444 aa35.9■■■■□ 3.34
HMGB1-205ENST00000399494 IREB2P48200 963 aaKnown RBP35.89■■■■□ 3.34
HMGB1-205ENST00000399494 ZNF70Q9UC06 446 aaPredicted RBP35.89■■■■□ 3.34
HMGB1-205ENST00000399494 TTF2Q9UNY4 1162 aaKnown RBP35.89■■■■□ 3.34
HMGB1-205ENST00000399494 IGF2BP3O00425 579 aaKnown RBP eCLIP35.88■■■■□ 3.33
HMGB1-205ENST00000399494 SPDYE2Q495Y8 402 aa35.88■■■■□ 3.33
HMGB1-205ENST00000399494 TDRD3Q9H7E2 651 aaKnown RBP35.87■■■■□ 3.33
HMGB1-205ENST00000399494 GJA5P36382 358 aa35.86■■■■□ 3.33
HMGB1-205ENST00000399494 MROH5Q6ZUA9 1318 aa35.85■■■■□ 3.33
HMGB1-205ENST00000399494 FBXO33Q7Z6M2 555 aa35.85■■■■□ 3.33
HMGB1-205ENST00000399494 DZIP1LQ8IYY4 767 aaKnown RBP35.85■■■■□ 3.33
HMGB1-205ENST00000399494 ANKRD13AQ8IZ07 590 aa35.85■■■■□ 3.33
HMGB1-205ENST00000399494 BICC1Q9H694 974 aaKnown RBP35.85■■■■□ 3.33
HMGB1-205ENST00000399494 PDE4DIPQ5VU43 2346 aa35.84■■■■□ 3.33
HMGB1-205ENST00000399494 TNFAIP1Q13829 316 aa35.84■■■■□ 3.33
HMGB1-205ENST00000399494 RABL6Q3YEC7 729 aaPredicted RBP35.84■■■■□ 3.33
HMGB1-205ENST00000399494 MRPL50Q8N5N7 158 aaKnown RBP35.83■■■■□ 3.33
HMGB1-205ENST00000399494 LRRC24Q50LG9 513 aa35.82■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms