RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 KLF18A0A0U1RQI7 1052 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 ZNF853P0CG23 659 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 CCT6AP40227 531 aaKnown RBP10.58□□□□□ -0.72
COL28A1-201ENST00000399429 NEDD9Q14511 834 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 FBXW10Q5XX13 1052 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 TXNDC2Q86VQ3 553 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 NUP133Q8WUM0 1156 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 CDC23Q9UJX2 597 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 IFFO1Q0D2I5 559 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 CCDC122Q5T0U0 273 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 NUTM2AQ8IVF1 878 aaPredicted RBP10.58□□□□□ -0.72
COL28A1-201ENST00000399429 MICAL1Q8TDZ2 1067 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 PCDHA7Q9UN72 937 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 FAM169AQ9Y6X4 670 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 RPAP1Q9BWH6 1393 aaPredicted RBP10.58□□□□□ -0.72
COL28A1-201ENST00000399429 IFT140Q96RY7 1462 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 GNAT3A8MTJ3 354 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 TULP2O00295 520 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 ARMCX5Q6P1M9 558 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 CCDC129Q6ZRS4 1044 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 FUCA2Q9BTY2 467 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 BAIAP2L1Q9UHR4 511 aa10.58□□□□□ -0.72
COL28A1-201ENST00000399429 MYL6BP14649 208 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 XBP1P17861 261 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 MAP2K1Q02750 393 aaPredicted RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 PNOCQ13519 176 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 CPLX4Q7Z7G2 160 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 MICU3Q86XE3 530 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 SLF1Q9BQI6 1058 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 ZNF518AQ6AHZ1 1483 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 MPHOSPH10O00566 681 aaKnown RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 USO1O60763 962 aaKnown RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 TBC1D8O95759 1140 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 NLRP6P59044 892 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 BIRC2Q13490 618 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 CFAP58Q5T655 872 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 PNMA8AQ86V59 439 aaPredicted RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 POLR1AO95602 1720 aaPredicted RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 TRAPPC8Q9Y2L5 1435 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 PSME1Q06323 249 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 ENOX2Q16206 610 aaKnown RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 CCDC96Q2M329 555 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 ADALQ6DHV7 355 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 PSMB7Q99436 277 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 UBAC1Q9BSL1 405 aa10.57□□□□□ -0.72
COL28A1-201ENST00000399429 PHAXQ9H814 394 aaKnown RBP10.57□□□□□ -0.72
COL28A1-201ENST00000399429 MACROD2A1Z1Q3 448 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 HSP90AB2PQ58FF8 381 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 AP1ARQ63HQ0 302 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 KCTD16Q68DU8 428 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 PACS2Q86VP3 889 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 WDR24Q96S15 920 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 RBM28Q9NW13 759 aaKnown RBP10.56□□□□□ -0.72
COL28A1-201ENST00000399429 RPGRIP1LQ68CZ1 1315 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 BUB1BO60566 1050 aaPredicted RBP10.56□□□□□ -0.72
COL28A1-201ENST00000399429 N4BP1O75113 896 aaKnown RBP10.56□□□□□ -0.72
COL28A1-201ENST00000399429 PDE6BP35913 854 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 HDGFP51858 240 aaKnown RBP10.56□□□□□ -0.72
COL28A1-201ENST00000399429 DHX32Q7L7V1 743 aaKnown RBP10.56□□□□□ -0.72
COL28A1-201ENST00000399429 ALG1Q9BT22 464 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 TANGO6Q9C0B7 1094 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 PPFIA1Q13136 1202 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 IQCB1Q15051 598 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 ATL3Q6DD88 541 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 CNGA4Q8IV77 575 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 SLC35F6Q8N357 371 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 SUGCTQ9HAC7 445 aa10.56□□□□□ -0.72
COL28A1-201ENST00000399429 KRT86O43790 486 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 STX10O60499 249 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 TRIM21P19474 475 aaKnown RBP10.55□□□□□ -0.72
COL28A1-201ENST00000399429 VAV2P52735 878 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 OSBPL5Q9H0X9 879 aaPredicted RBP10.55□□□□□ -0.72
COL28A1-201ENST00000399429 PPANQ9NQ55 473 aaKnown RBP10.55□□□□□ -0.72
COL28A1-201ENST00000399429 TTF2Q9UNY4 1162 aaKnown RBP10.55□□□□□ -0.72
COL28A1-201ENST00000399429 NDUFB9Q9Y6M9 179 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 WDR62O43379 1518 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 E7EVH7 732 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 IDEP14735 1019 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 ANO1Q5XXA6 986 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 EHBP1Q8NDI1 1231 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 TBC1D31Q96DN5 1066 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 CEP89Q96ST8 783 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 ENC1O14682 589 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 NBPF7P0C2Y1 421 aaPredicted RBP10.55□□□□□ -0.72
COL28A1-201ENST00000399429 IFT88Q13099 833 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 TUBB2AQ13885 445 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 ZNF827Q17R98 1081 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 CTAGE1Q96RT6 745 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 TUBB2BQ9BVA1 445 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 IRX2Q9BZI1 471 aaPredicted RBP10.55□□□□□ -0.72
COL28A1-201ENST00000399429 VPS16Q9H269 839 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 STAP2Q9UGK3 403 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 RIMS2Q9UQ26 1411 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 CLASP1Q7Z460 1538 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 GOLGA6L10A0A0M3HER8 536 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 CHL1O00533 1208 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 PFKFB1P16118 471 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 CCDC178Q5BJE1 867 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 TAF4BQ92750 862 aa10.55□□□□□ -0.72
COL28A1-201ENST00000399429 EDC3Q96F86 508 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms