RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ERBINQ96RT1 1412 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 TRIM14Q14142 442 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 FAM204AQ9H8W3 233 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 ABCC11Q96J66 1382 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 TXNDC9O14530 226 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 MAP3K7CLP57077 242 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 HSP90AA5PQ58FG0 334 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 SPATS2Q86XZ4 545 aaKnown RBP13.05□□□□□ -0.32
VPS13A-205ENST00000376636 AFMP43652 599 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 C8orf74Q6P047 294 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 TDRD9Q8NDG6 1382 aaKnown RBP13.05□□□□□ -0.32
VPS13A-205ENST00000376636 RPL13P26373 211 aaKnown RBP13.05□□□□□ -0.32
VPS13A-205ENST00000376636 CXorf38Q8TB03 319 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 ORC3Q9UBD5 711 aaPredicted RBP13.05□□□□□ -0.32
VPS13A-205ENST00000376636 ATAD2Q6PL18 1390 aa13.05□□□□□ -0.32
VPS13A-205ENST00000376636 PDCD7Q8N8D1 485 aaKnown RBP13.05□□□□□ -0.32
VPS13A-205ENST00000376636 MUM1L1Q5H9M0 696 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 VSIG1Q86XK7 387 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 LDHCP07864 332 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 IFIT1BQ5T764 474 aaKnown RBP13.04□□□□□ -0.32
VPS13A-205ENST00000376636 LRCH2Q5VUJ6 765 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 MCM10Q7L590 875 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 NEK1Q96PY6 1258 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 GCKP35557 465 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 GNAQP50148 359 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 PPP2R3AQ06190 1150 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 MTMR3Q13615 1198 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 LARSQ9P2J5 1176 aaKnown RBP13.04□□□□□ -0.32
VPS13A-205ENST00000376636 PPP1R2P41236 205 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 ZNF569Q5MCW4 686 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 STX10O60499 249 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 PPP4R1Q8TF05 950 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 CRNKL1Q9BZJ0 848 aaKnown RBP13.04□□□□□ -0.32
VPS13A-205ENST00000376636 SPDYE3A6NKU9 549 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 GIMAP6Q6P9H5 292 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 ZGPATQ8N5A5 531 aaKnown RBP13.04□□□□□ -0.32
VPS13A-205ENST00000376636 AOPEPQ8N6M6 819 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 TBC1D2Q9BYX2 928 aa13.04□□□□□ -0.32
VPS13A-205ENST00000376636 TSPY3P0CV98 308 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 TSPY8P0CW00 308 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 CALML3P27482 149 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 ZNF710Q8N1W2 664 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 WTAPQ15007 396 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 LZTFL1Q9NQ48 299 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 SLC8A1P32418 973 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 TRIM4Q9C037 500 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 PTPRGP23470 1445 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 DBN1Q16643 649 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 DPH6Q7L8W6 267 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 RBBP5Q15291 538 aaKnown RBP13.03□□□□□ -0.32
VPS13A-205ENST00000376636 PANK2Q9BZ23 570 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 HECW1Q76N89 1606 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 OPHN1O60890 802 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 BMP2KLQ5H9B9 411 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 CCDC122Q5T0U0 273 aa13.03□□□□□ -0.32
VPS13A-205ENST00000376636 LEO1Q8WVC0 666 aaPredicted RBP13.03□□□□□ -0.32
VPS13A-205ENST00000376636 RIOK3O14730 519 aaKnown RBP13.02□□□□□ -0.32
VPS13A-205ENST00000376636 NFE2L2Q16236 605 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 ANKRD20A3Q5VUR7 823 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 CCDC125Q86Z20 511 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 GTF3C6Q969F1 213 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 DRC3Q9H069 523 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 GOLGA6BA6NDN3 693 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 DENND2CQ68D51 928 aa13.02□□□□□ -0.32
VPS13A-205ENST00000376636 TRMT1LQ7Z2T5 733 aaKnown RBP13.02□□□□□ -0.32
VPS13A-205ENST00000376636 TFIP11Q9UBB9 837 aaKnown RBP13.02□□□□□ -0.32
VPS13A-205ENST00000376636 FAF1Q9UNN5 650 aaPredicted RBP13.02□□□□□ -0.32
VPS13A-205ENST00000376636 GABPB1Q06547 395 aaPredicted RBP13.02□□□□□ -0.33
VPS13A-205ENST00000376636 PFDN1O60925 122 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 PPP1R21Q6ZMI0 780 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 DUSP27Q5VZP5 1158 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 AFG3L2Q9Y4W6 797 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 SPECC1L-ADORA2AF8WAN1 911 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 RTEL1-TNFRSF6BF6WH68 1400 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 CABS1Q96KC9 395 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 TMOD3Q9NYL9 352 aa13.02□□□□□ -0.33
VPS13A-205ENST00000376636 PHEXP78562 749 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 CDC5LQ99459 802 aaKnown RBP13.01□□□□□ -0.33
VPS13A-205ENST00000376636 GDPD2Q9HCC8 539 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 MCM7P33993 719 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 LIN9Q5TKA1 542 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 CCDC85AQ96PX6 553 aaPredicted RBP13.01□□□□□ -0.33
VPS13A-205ENST00000376636 MYCBPQ99417 103 aaPredicted RBP13.01□□□□□ -0.33
VPS13A-205ENST00000376636 GABPAQ06546 454 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 AMOTQ4VCS5 1084 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 WDR44Q5JSH3 913 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 PPFIA3O75145 1194 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 HHATQ5VTY9 493 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 NBPF6Q5VWK0 638 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 CCDC186Q7Z3E2 898 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 NBPF4Q96M43 638 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 PARP2Q9UGN5 583 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 FAM135AQ9P2D6 1515 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 GOLGA8QA0A0J9YX86 632 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 GOLGA8OA6NCC3 632 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 GOLGA8NF8WBI6 632 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 MICAL1Q8TDZ2 1067 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 STX8Q9UNK0 236 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 ESR2Q92731 530 aa13.01□□□□□ -0.33
VPS13A-205ENST00000376636 PRAM1Q96QH2 718 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms