RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 TLDC2A0PJX2 215 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 SGSM2O43147 1006 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 SPDL1Q96EA4 605 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 USP28Q96RU2 1077 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 UBAC1Q9BSL1 405 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 AKR1B15C9JRZ8 316 aaPredicted RBP13.37□□□□□ -0.27
PTPN1-201ENST00000371621 SRGAP1Q7Z6B7 1085 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 IGSF22Q8N9C0 903 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 GNL3LQ9NVN8 582 aaKnown RBP13.37□□□□□ -0.27
PTPN1-201ENST00000371621 MTMR7Q9Y216 660 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 BCORL1Q5H9F3 1711 aa13.37□□□□□ -0.27
PTPN1-201ENST00000371621 KIF5BP33176 963 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 PCK1P35558 622 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 NOP2P46087 812 aaKnown RBP13.36□□□□□ -0.27
PTPN1-201ENST00000371621 CCDC122Q5T0U0 273 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 SMARCC2Q8TAQ2 1214 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 YIPF3Q9GZM5 350 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 MED4Q9NPJ6 270 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 HNRNPH1P31943 449 aaKnown RBP13.36□□□□□ -0.27
PTPN1-201ENST00000371621 G2E3Q7L622 706 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 TCP11Q8WWU5 503 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 DONSONQ9NYP3 566 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 NFE2L3Q9Y4A8 694 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 PTPDC1A2A3K4 754 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 CCDC178Q5BJE1 867 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 NUTM2GQ5VZR2 741 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 TANGO6Q9C0B7 1094 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 TADA3O75528 432 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 ZNF202O95125 648 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 TBC1D8O95759 1140 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 PSMD2Q13200 908 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 SNCBQ16143 134 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 CCDC96Q2M329 555 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 UHRF1BP1Q6BDS2 1440 aa13.36□□□□□ -0.27
PTPN1-201ENST00000371621 TPX2Q9ULW0 747 aaKnown RBP13.36□□□□□ -0.27
PTPN1-201ENST00000371621 CHUKO15111 745 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 MYO1BO43795 1136 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 FKBP4Q02790 459 aaKnown RBP eCLIP13.35□□□□□ -0.27
PTPN1-201ENST00000371621 PTH1RQ03431 593 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 WDR24Q96S15 920 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 CDK19Q9BWU1 502 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 CD248Q9HCU0 757 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 KIAA1468Q9P260 1216 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 RPGRIP1LQ68CZ1 1315 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 GOLGA8BA8MQT2 603 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 NMIQ13287 307 aaPredicted RBP13.35□□□□□ -0.27
PTPN1-201ENST00000371621 RIC3Q7Z5B4 369 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 CCDC170Q8IYT3 715 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 FAM227BQ96M60 508 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 SLC52A1Q9NWF4 448 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 PA2G4Q9UQ80 394 aaKnown RBP13.35□□□□□ -0.27
PTPN1-201ENST00000371621 ITSN2Q9NZM3 1697 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 PTPRCP08575 1304 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 MAGI2Q86UL8 1455 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 NLRP1Q9C000 1473 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 TRHP20396 242 aaPredicted RBP13.35□□□□□ -0.27
PTPN1-201ENST00000371621 ELF1P32519 619 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 PDCLQ13371 301 aa13.35□□□□□ -0.27
PTPN1-201ENST00000371621 G3BP2Q9UN86 482 aaKnown RBP13.35□□□□□ -0.27
PTPN1-201ENST00000371621 MYO1FO00160 1098 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 H2AFXP16104 143 aaPredicted RBP13.34□□□□□ -0.27
PTPN1-201ENST00000371621 CORO7P57737 925 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 KCNG4Q8TDN1 519 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 STK38LQ9Y2H1 464 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 NCOA3Q9Y6Q9 1424 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 ZNF827Q17R98 1081 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 GSPT2Q8IYD1 628 aaKnown RBP13.34□□□□□ -0.27
PTPN1-201ENST00000371621 TTC41PQ6P2S7 1318 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 VAV2P52735 878 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 CCZ1BP86790 482 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 CCZ1P86791 482 aaPredicted RBP13.34□□□□□ -0.27
PTPN1-201ENST00000371621 CKAP4Q07065 602 aaKnown RBP13.34□□□□□ -0.27
PTPN1-201ENST00000371621 TEX11Q8IYF3 940 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 SLC35F6Q8N357 371 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 CDC23Q9UJX2 597 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 MSH6P52701 1360 aa13.34□□□□□ -0.27
PTPN1-201ENST00000371621 TUBBP07437 444 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 IDEP14735 1019 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 PPFIA1Q13136 1202 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 CDC5LQ99459 802 aaKnown RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 VPS16Q9H269 839 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 SYCP2Q9BX26 1530 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 NCAPH2Q6IBW4 605 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 FAM43BQ6ZT52 329 aaPredicted RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 RPUSD2Q8IZ73 545 aaKnown RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 EVI5LQ96CN4 794 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 PHLPP2Q6ZVD8 1323 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 H3BQF6 201 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 SMIM24O75264 130 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 TRIM21P19474 475 aaKnown RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 ZC3H6P61129 1189 aaKnown RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 SF3B2Q13435 895 aaKnown RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 GNPTABQ3T906 1256 aa13.33□□□□□ -0.28
PTPN1-201ENST00000371621 TDRD12Q587J7 1177 aaKnown RBP13.33□□□□□ -0.28
PTPN1-201ENST00000371621 FYB1O15117 783 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 ZPR1O75312 459 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 SASH3O75995 380 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 PAX7P23759 505 aa13.32□□□□□ -0.28
PTPN1-201ENST00000371621 NCBP3Q53F19 620 aaKnown RBP13.32□□□□□ -0.28
PTPN1-201ENST00000371621 THOC1Q96FV9 657 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms