RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 BBOX1O75936 387 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 ZBTB7AO95365 584 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 CHRNA5P30532 468 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 KLHL40Q2TBA0 621 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 ZNF589Q86UQ0 364 aaPredicted RBP15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 ANKIB1Q9P2G1 1089 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 CAVIN4Q5BKX8 364 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 SPATA5Q8NB90 893 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 SLC16A10Q8TF71 515 aa15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 LSG1Q9H089 658 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 GNL3LQ9NVN8 582 aaKnown RBP15.73■□□□□ 0.11
SQSTM1-201ENST00000360718 PPEF1O14829 653 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 CLCN1P35523 988 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 XDHP47989 1333 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 PTH1RQ03431 593 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 R3HDM1Q15032 1099 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 FBXO33Q7Z6M2 555 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 VPS37DQ86XT2 251 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 C2CD5Q86YS7 1000 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 DOCK2Q92608 1830 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 TRIM44Q96DX7 344 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 MASTLQ96GX5 879 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 MED23Q9ULK4 1368 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 NSFL1CQ9UNZ2 370 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 DDX49Q9Y6V7 483 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 SLX4Q8IY92 1834 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 C10orf71Q711Q0 1435 aa15.72■□□□□ 0.11
SQSTM1-201ENST00000360718 CCDC129Q6ZRS4 1044 aa15.71■□□□□ 0.11
SQSTM1-201ENST00000360718 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.71■□□□□ 0.11
SQSTM1-201ENST00000360718 ZFYP08048 801 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 ZSCAN25Q6NSZ9 544 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 TMC4Q7Z404 712 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 ANP32BQ92688 251 aaKnown RBP15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 ZNF622Q969S3 477 aaKnown RBP eCLIP15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 PALD1Q9ULE6 856 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 DUOX1Q9NRD9 1551 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 RNF113AO15541 343 aaKnown RBP15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 MCM2P49736 904 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 MCMDC2Q4G0Z9 681 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 UBE2Q2Q8WVN8 375 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 POLLQ9UGP5 575 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 ATF5Q9Y2D1 282 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 LEMD3Q9Y2U8 911 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 ATP6V0A2Q9Y487 856 aa15.7■□□□□ 0.1
SQSTM1-201ENST00000360718 H0YIN7 160 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 UFL1O94874 794 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 ZMYM1Q5SVZ6 1142 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 SP8Q8IXZ3 490 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 HELLSQ9NRZ9 838 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 PSDA5PKW4 1024 aaPredicted RBP15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 ALDH1B1P30837 517 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 HIBADHP31937 336 aaKnown RBP15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 ANAPC15P60006 121 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 GAS2L3Q86XJ1 694 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 PODXL2Q9NZ53 605 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 WWC3Q9ULE0 1092 aa15.69■□□□□ 0.1
SQSTM1-201ENST00000360718 CCDC171Q6TFL3 1326 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 KIF13BQ9NQT8 1826 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 TBC1D16Q8TBP0 767 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 OSBP2Q969R2 916 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 DLEC1Q9Y238 1755 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 CCDC88AQ3V6T2 1871 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 MAST3O60307 1309 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 M0R2C6 588 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 IDH1O75874 414 aaKnown RBP15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 MCTP1Q6DN14 999 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 STYK1Q6J9G0 422 aa15.68■□□□□ 0.1
SQSTM1-201ENST00000360718 PRPF40BQ6NWY9 871 aaKnown RBP15.67■□□□□ 0.1
SQSTM1-201ENST00000360718 TMX4Q9H1E5 349 aaPredicted RBP15.67■□□□□ 0.1
SQSTM1-201ENST00000360718 GGA1Q9UJY5 639 aa15.67■□□□□ 0.1
SQSTM1-201ENST00000360718 ATP2B4P23634 1241 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 HSPA4P34932 840 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 ADD2P35612 726 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 WASHC4Q2M389 1173 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 PUS7LQ9H0K6 701 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 JAG2Q9Y219 1238 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 KIAA1551Q9HCM1 1747 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 ESPNB1AK53 854 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 SEMA3EO15041 775 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 CCDC173Q0VFZ6 552 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 SLC9C2Q5TAH2 1124 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 VPS53Q5VIR6 699 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 C15orf52Q6ZUT6 534 aaKnown RBP15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 MTFR1LQ9H019 292 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 DENND2AQ9ULE3 1009 aa15.66■□□□□ 0.1
SQSTM1-201ENST00000360718 CHD4Q14839 1912 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 TCRBV5S4A2TA0A5A2 114 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 PDE6AP16499 860 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 KCNA3P22001 575 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 MAP3K12Q12852 859 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 RASEFQ8IZ41 740 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 MAP4K1Q92918 833 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 ZNF219Q9P2Y4 722 aaPredicted RBP15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 ZNF445P59923 1031 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 APPBP2Q92624 585 aa15.65■□□□□ 0.1
SQSTM1-201ENST00000360718 ZNF532Q9HCE3 1301 aa15.64■□□□□ 0.1
SQSTM1-201ENST00000360718 A0A0G2JLW4 131 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 C6orf229H3BNL8 230 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 FOXP2O15409 715 aa15.64■□□□□ 0.09
SQSTM1-201ENST00000360718 NASPP49321 788 aaPredicted RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms