RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 MRPS27Q92552 414 aaKnown RBP10.9□□□□□ -0.66
CUX1-203ENST00000360264 TAOK1Q7L7X3 1001 aa10.9□□□□□ -0.66
CUX1-203ENST00000360264 RTCBQ9Y3I0 505 aaKnown RBP10.9□□□□□ -0.66
CUX1-203ENST00000360264 USH1CQ9Y6N9 552 aa10.9□□□□□ -0.66
CUX1-203ENST00000360264 MAGEB6P1A0A0J9YX57 407 aa10.9□□□□□ -0.66
CUX1-203ENST00000360264 PLCD1P51178 756 aa10.9□□□□□ -0.66
CUX1-203ENST00000360264 SETDB1Q15047 1291 aa10.9□□□□□ -0.66
CUX1-203ENST00000360264 TRMT1LQ7Z2T5 733 aaKnown RBP10.9□□□□□ -0.66
CUX1-203ENST00000360264 FAM114A2Q9NRY5 505 aa10.9□□□□□ -0.66
CUX1-203ENST00000360264 THUMPD2Q9BTF0 503 aaKnown RBP10.9□□□□□ -0.66
CUX1-203ENST00000360264 RAPGEF3O95398 923 aa10.9□□□□□ -0.67
CUX1-203ENST00000360264 ZSCAN22P10073 491 aaPredicted RBP10.9□□□□□ -0.67
CUX1-203ENST00000360264 IL2RBP14784 551 aa10.9□□□□□ -0.67
CUX1-203ENST00000360264 FNBP1Q96RU3 617 aa10.9□□□□□ -0.67
CUX1-203ENST00000360264 WAPLQ7Z5K2 1190 aa10.9□□□□□ -0.67
CUX1-203ENST00000360264 MNAT1P51948 309 aa10.9□□□□□ -0.67
CUX1-203ENST00000360264 CNGA4Q8IV77 575 aa10.9□□□□□ -0.67
CUX1-203ENST00000360264 GRM8O00222 908 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 PLCB3Q01970 1234 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 CALCOCO2Q13137 446 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 CROCCP2Q86T23 111 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 CCDC65Q8IXS2 484 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 PUS7Q96PZ0 661 aaKnown RBP10.89□□□□□ -0.67
CUX1-203ENST00000360264 ATP6V1AP38606 617 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 INF2Q27J81 1249 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 NOX5Q96PH1 765 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 NBPF14Q5TI25 921 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 VEZTQ9HBM0 779 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 ABCC5O15440 1437 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 NOP56O00567 594 aaKnown RBP10.89□□□□□ -0.67
CUX1-203ENST00000360264 LIN9Q5TKA1 542 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 Q6ZUG5 572 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 PARP3Q9Y6F1 533 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 STRN3Q13033 797 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 TPTE2Q6XPS3 522 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 PAIP2Q9BPZ3 127 aaKnown RBP10.89□□□□□ -0.67
CUX1-203ENST00000360264 TTC41PQ6P2S7 1318 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 UBXN1Q04323 297 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 PPP1R7Q15435 360 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 LGSNQ5TDP6 509 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 ZNF830Q96NB3 372 aaPredicted RBP10.89□□□□□ -0.67
CUX1-203ENST00000360264 PFDN4Q9NQP4 134 aa10.89□□□□□ -0.67
CUX1-203ENST00000360264 SYT1P21579 422 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 BRAPQ7Z569 592 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 ARFGAP2Q8N6H7 521 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 LAMC3Q9Y6N6 1575 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 UBL4BQ8N7F7 174 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 ZBTB3Q9H5J0 574 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 CCDC114Q96M63 670 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 GSDMBQ8TAX9 411 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 TBC1D32Q96NH3 1257 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 USHBP1Q8N6Y0 703 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 SKILP12757 684 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 ZSCAN23Q3MJ62 389 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 C11orf95C9JLR9 678 aaPredicted RBP10.88□□□□□ -0.67
CUX1-203ENST00000360264 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.88□□□□□ -0.675e-24■■■■■ 156.6
CUX1-203ENST00000360264 ARHGEF11O15085 1522 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 ATP5J2-PTCD1G3V325 749 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 RAB3IPQ96QF0 476 aaPredicted RBP10.88□□□□□ -0.67
CUX1-203ENST00000360264 VCX3BQ9H321 246 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 HACE1Q8IYU2 909 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 STMN2Q93045 179 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 TBC1D2Q9BYX2 928 aa10.88□□□□□ -0.67
CUX1-203ENST00000360264 PARP1P09874 1014 aaKnown RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 DENND4BO75064 1496 aaPredicted RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 GTF2F1P35269 517 aaKnown RBP eCLIP10.87□□□□□ -0.672e-8■■■□□ 18.7
CUX1-203ENST00000360264 CLEC11AQ9Y240 323 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 BACH1O14867 736 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 RPUSD2Q8IZ73 545 aaKnown RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 HDAC1Q13547 482 aaPredicted RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 DHX32Q7L7V1 743 aaKnown RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 TTC6Q86TZ1 520 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 MAGEB6Q8N7X4 407 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 UTP11Q9Y3A2 253 aaKnown RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 ZCRB1Q8TBF4 217 aaKnown RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 MMRN2Q9H8L6 949 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 PNMA2Q9UL42 364 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 PPP2R5BQ15173 497 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 ZC3H12CQ9C0D7 883 aaKnown RBP10.87□□□□□ -0.67
CUX1-203ENST00000360264 PAG1Q9NWQ8 432 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 SV2BQ7L1I2 683 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 CCDC125Q86Z20 511 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 TRPC3Q13507 836 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 C10orf67Q8IYJ2 551 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 RAD50Q92878 1312 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 IQCDQ96DY2 449 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 FAM204AQ9H8W3 233 aa10.87□□□□□ -0.67
CUX1-203ENST00000360264 NIP7Q9Y221 180 aaKnown RBP eCLIP10.87□□□□□ -0.672e-10■■■■■ 60.1
CUX1-203ENST00000360264 YWHAEP62258 255 aaKnown RBP10.86□□□□□ -0.67
CUX1-203ENST00000360264 SSFA2P28290 1259 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 EBAG9O00559 213 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 CNNM4Q6P4Q7 775 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 SYCE1Q8N0S2 351 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 CALUO43852 315 aaPredicted RBP10.86□□□□□ -0.67
CUX1-203ENST00000360264 ATRIPQ8WXE1 791 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 GPHNQ9NQX3 736 aaPredicted RBP10.86□□□□□ -0.67
CUX1-203ENST00000360264 PICK1Q9NRD5 415 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 TEX14Q8IWB6 1497 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 PDE6BP35913 854 aa10.86□□□□□ -0.67
CUX1-203ENST00000360264 BIN2Q9UBW5 565 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms