RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ILDR2Q71H61 639 aa22.42■■□□□ 1.18
CLN3-206ENST00000360019 MPNDQ8N594 471 aa22.42■■□□□ 1.18
CLN3-206ENST00000360019 SGIP1Q9BQI5 828 aa22.42■■□□□ 1.18
CLN3-206ENST00000360019 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.42■■□□□ 1.182e-6■■■■■ 40.7
CLN3-206ENST00000360019 CCDC171Q6TFL3 1326 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 ADD2P35612 726 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 CCDC129Q6ZRS4 1044 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 OSBP2Q969R2 916 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 WWC3Q9ULE0 1092 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 MAST3O60307 1309 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 PDS5AQ29RF7 1337 aaKnown RBP22.41■■□□□ 1.18
CLN3-206ENST00000360019 C6orf229H3BNL8 230 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 KCNA3P22001 575 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 SLC9C2Q5TAH2 1124 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 ZNF804AQ7Z570 1209 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 C7orf43Q8WVR3 580 aa22.41■■□□□ 1.18
CLN3-206ENST00000360019 A0A0G2JLW4 131 aa22.4■■□□□ 1.18
CLN3-206ENST00000360019 FRAT2O75474 233 aaPredicted RBP22.4■■□□□ 1.18
CLN3-206ENST00000360019 DPEP1P16444 411 aa22.4■■□□□ 1.18
CLN3-206ENST00000360019 ZSCAN25Q6NSZ9 544 aa22.4■■□□□ 1.18
CLN3-206ENST00000360019 DPP8Q6V1X1 898 aaPredicted RBP22.4■■□□□ 1.18
CLN3-206ENST00000360019 TMX4Q9H1E5 349 aaPredicted RBP22.4■■□□□ 1.18
CLN3-206ENST00000360019 MYH13Q9UKX3 1938 aa22.4■■□□□ 1.18
CLN3-206ENST00000360019 PDE6AP16499 860 aa22.39■■□□□ 1.17
CLN3-206ENST00000360019 TDRD7Q8NHU6 1098 aaKnown RBP22.39■■□□□ 1.17
CLN3-206ENST00000360019 APPBP2Q92624 585 aa22.39■■□□□ 1.17
CLN3-206ENST00000360019 KIAA1551Q9HCM1 1747 aa22.39■■□□□ 1.17
CLN3-206ENST00000360019 TCRBV5S4A2TA0A5A2 114 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 M0R2C6 588 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 MAP3K12Q12852 859 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 UBE3CQ15386 1083 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 WASHC4Q2M389 1173 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 PALD1Q9ULE6 856 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 SNED1Q8TER0 1413 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 SRCAPQ6ZRS2 3230 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 HSPA4P34932 840 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 MAP4K1Q92918 833 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 PUS7LQ9H0K6 701 aaKnown RBP22.38■■□□□ 1.17
CLN3-206ENST00000360019 CD209Q9NNX6 404 aa22.38■■□□□ 1.17
CLN3-206ENST00000360019 ZNF219Q9P2Y4 722 aaPredicted RBP22.38■■□□□ 1.17
CLN3-206ENST00000360019 ZNF532Q9HCE3 1301 aa22.37■■□□□ 1.17
CLN3-206ENST00000360019 PTGER2P43116 358 aa22.37■■□□□ 1.17
CLN3-206ENST00000360019 IPO9Q96P70 1041 aaKnown RBP22.37■■□□□ 1.17
CLN3-206ENST00000360019 LRP2BPQ9P2M1 347 aa22.37■■□□□ 1.17
CLN3-206ENST00000360019 ABCF2Q9UG63 623 aa22.37■■□□□ 1.17
CLN3-206ENST00000360019 MCCP23508 829 aa22.36■■□□□ 1.17
CLN3-206ENST00000360019 CHAF1AQ13111 956 aaPredicted RBP22.36■■□□□ 1.17
CLN3-206ENST00000360019 MAGEB6Q8N7X4 407 aa22.36■■□□□ 1.17
CLN3-206ENST00000360019 TTLL6Q8N841 843 aa22.36■■□□□ 1.17
CLN3-206ENST00000360019 JAG2Q9Y219 1238 aa22.36■■□□□ 1.17
CLN3-206ENST00000360019 IL1R1P14778 569 aa22.36■■□□□ 1.17
CLN3-206ENST00000360019 TGFB2P61812 414 aa22.36■■□□□ 1.17
CLN3-206ENST00000360019 RIMBP2O15034 1052 aa22.35■■□□□ 1.17
CLN3-206ENST00000360019 VPS53Q5VIR6 699 aa22.35■■□□□ 1.17
CLN3-206ENST00000360019 DDRGK1Q96HY6 314 aa22.35■■□□□ 1.17
CLN3-206ENST00000360019 RBM8AQ9Y5S9 174 aaKnown RBP22.35■■□□□ 1.17
CLN3-206ENST00000360019 C21orf2O43822 256 aa22.34■■□□□ 1.17
CLN3-206ENST00000360019 ANAPC15P60006 121 aa22.34■■□□□ 1.17
CLN3-206ENST00000360019 IL17RAQ96F46 866 aa22.34■■□□□ 1.17
CLN3-206ENST00000360019 ZC3H12CQ9C0D7 883 aaKnown RBP22.34■■□□□ 1.17
CLN3-206ENST00000360019 RAI14Q9P0K7 980 aa22.34■■□□□ 1.17
CLN3-206ENST00000360019 NECTIN1Q15223 517 aa22.33■■□□□ 1.16
CLN3-206ENST00000360019 CC2D2BQ6DHV5 1058 aa22.33■■□□□ 1.16
CLN3-206ENST00000360019 RTFDC1Q9BY42 306 aaPredicted RBP22.33■■□□□ 1.16
CLN3-206ENST00000360019 SALL1Q9NSC2 1324 aa22.33■■□□□ 1.16
CLN3-206ENST00000360019 GPAA1O43292 621 aa22.32■■□□□ 1.16
CLN3-206ENST00000360019 ZNF384Q8TF68 577 aa22.32■■□□□ 1.16
CLN3-206ENST00000360019 COA1Q9GZY4 146 aa22.32■■□□□ 1.16
CLN3-206ENST00000360019 UTRNP46939 3433 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 PRDX5P30044 214 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 RASEFQ8IZ41 740 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 WDR66Q8TBY9 1149 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 EYA3Q99504 573 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 DSCC1Q9BVC3 393 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 PPP1R1BQ9UD71 204 aaPredicted RBP22.31■■□□□ 1.16
CLN3-206ENST00000360019 FOXP2O15409 715 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 HSPD1P10809 573 aaKnown RBP22.31■■□□□ 1.16
CLN3-206ENST00000360019 KCNB2Q92953 911 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 SNX14Q9Y5W7 946 aa22.31■■□□□ 1.16
CLN3-206ENST00000360019 RABEP1Q15276 862 aa22.3■■□□□ 1.16
CLN3-206ENST00000360019 CREB3L3Q68CJ9 461 aa22.3■■□□□ 1.16
CLN3-206ENST00000360019 ERICH6Q7L0X2 663 aa22.3■■□□□ 1.16
CLN3-206ENST00000360019 ADGRA1Q86SQ6 560 aa22.3■■□□□ 1.16
CLN3-206ENST00000360019 NSUN4Q96CB9 384 aaKnown RBP22.3■■□□□ 1.16
CLN3-206ENST00000360019 PIM2Q9P1W9 311 aa22.3■■□□□ 1.16
CLN3-206ENST00000360019 CD2APQ9Y5K6 639 aa22.3■■□□□ 1.16
CLN3-206ENST00000360019 CHD4Q14839 1912 aa22.29■■□□□ 1.16
CLN3-206ENST00000360019 CYP7A1P22680 504 aa22.29■■□□□ 1.16
CLN3-206ENST00000360019 SLC27A2O14975 620 aa22.29■■□□□ 1.16
CLN3-206ENST00000360019 MECOMQ03112 1051 aa22.29■■□□□ 1.16
CLN3-206ENST00000360019 DOK7Q18PE1 504 aa22.29■■□□□ 1.16
CLN3-206ENST00000360019 CCDC93Q567U6 631 aa22.29■■□□□ 1.16
CLN3-206ENST00000360019 ZGPATQ8N5A5 531 aaKnown RBP22.29■■□□□ 1.16
CLN3-206ENST00000360019 U3KPZ7 1027 aaPredicted RBP22.29■■□□□ 1.16
CLN3-206ENST00000360019 BRCA1P38398 1863 aaKnown RBP22.29■■□□□ 1.16
CLN3-206ENST00000360019 GRIK5Q16478 980 aa22.28■■□□□ 1.16
CLN3-206ENST00000360019 KLHL34Q8N239 644 aa22.28■■□□□ 1.16
CLN3-206ENST00000360019 AIDAQ96BJ3 306 aa22.28■■□□□ 1.16
CLN3-206ENST00000360019 MBD4O95243 580 aa22.27■■□□□ 1.16
CLN3-206ENST00000360019 NAA16Q6N069 864 aaPredicted RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms