RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 C15orf52Q6ZUT6 534 aaKnown RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 TMC4Q7Z404 712 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 ADGRA1Q86SQ6 560 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 ERC1Q8IUD2 1116 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 LARGE2Q8N3Y3 721 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 TMX4Q9H1E5 349 aaPredicted RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 STAP2Q9UGK3 403 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 SCAF8Q9UPN6 1271 aaKnown RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 MED23Q9ULK4 1368 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 DDNO94850 711 aaPredicted RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 IFIT1P09914 478 aaKnown RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 SLC5A1P13866 664 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 PRKCSHP14314 528 aaPredicted RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 CHAF1AQ13111 956 aaPredicted RBP4.94□□□□□ -1.62
LIG4-201ENST00000356922 AKAP2Q9Y2D5 859 aa4.94□□□□□ -1.62
LIG4-201ENST00000356922 FZD9O00144 591 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 PSMD14O00487 310 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 ARID4AP29374 1257 aaPredicted RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 TTLL5Q6EMB2 1281 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 DNAJC2Q99543 621 aaKnown RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 ECHDC1Q9NTX5 307 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 RNF181Q9P0P0 153 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 ZNF646O15015 1829 aaPredicted RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 POTECB2RU33 542 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 F8W031 263 aaPredicted RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 GOLIM4O00461 696 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 ATP5JP18859 108 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 DACT2Q5SW24 774 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 CC2D2BQ6DHV5 1058 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 DLK2Q6UY11 383 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 SPATA5Q8NB90 893 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 OSBPL3Q9H4L5 887 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 DCAF8L1A6NGE4 600 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 SDSP20132 328 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 LMNB1P20700 586 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 DIXDC1Q155Q3 683 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 GORABQ5T7V8 394 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 SEC62Q99442 399 aaKnown RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 RNF216Q9NWF9 866 aaPredicted RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 ASTN2O75129 1339 aaPredicted RBP4.93□□□□□ -1.62
LIG4-201ENST00000356922 LTBP3Q9NS15 1303 aa4.93□□□□□ -1.62
LIG4-201ENST00000356922 SMIM22K7EJ46 135 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 SCNN1DP51172 638 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 CAVIN4Q5BKX8 364 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 VPS37DQ86XT2 251 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 GMLQ99445 158 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 HAUS7Q99871 368 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 COA1Q9GZY4 146 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 ABCF2Q9UG63 623 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 ZNRF3Q9ULT6 936 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 SLURP2P0DP57 97 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 EVX2Q03828 476 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 TTC39AQ5SRH9 613 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 PODNQ7Z5L7 613 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 KIAA0825Q8IV33 1275 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 FBXW7Q969H0 707 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 ARAP2Q8WZ64 1704 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 SEC24BO95487 1268 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 VIL1P09327 827 aaKnown RBP4.92□□□□□ -1.62
LIG4-201ENST00000356922 CCDC158Q5M9N0 1113 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 MFSD14BQ5SR56 506 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 TTC22Q5TAA0 569 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 ZNF512BQ96KM6 892 aaPredicted RBP4.92□□□□□ -1.62
LIG4-201ENST00000356922 FRAT2O75474 233 aaPredicted RBP4.92□□□□□ -1.62
LIG4-201ENST00000356922 POTEIP0CG38 1075 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 POTEJP0CG39 1038 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 EPS15P42566 896 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 FAM227BQ96M60 508 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 PAG1Q9NWQ8 432 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 GJA3Q9Y6H8 435 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 ADAMTSL1Q8N6G6 1762 aa4.92□□□□□ -1.62
LIG4-201ENST00000356922 FAM205AQ6ZU69 1335 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 HIRAP54198 1017 aaPredicted RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 MECOMQ03112 1051 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 SOGA3Q5TF21 947 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 SAMD7Q7Z3H4 446 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 ZNF804AQ7Z570 1209 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 ZNF526Q8TF50 670 aaPredicted RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 RILPL2Q969X0 211 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 EYA3Q99504 573 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 PUS7LQ9H0K6 701 aaKnown RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 TCRBV5S4A2TA0A5A2 114 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 USP17L3A6NCW0 530 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 USP17L4A6NCW7 530 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 FOXP2O15409 715 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 GRIN3BO60391 1043 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 STRIP1Q5VSL9 837 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 USP17L1Q7RTZ2 530 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 NIM1KQ8IY84 436 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 JDP2Q8WYK2 163 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 NSUN4Q96CB9 384 aaKnown RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 TTC41PQ6P2S7 1318 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 MYH13Q9UKX3 1938 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 IDH1O75874 414 aaKnown RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 GMPSP49915 693 aaPredicted RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 COL9A3Q14050 684 aaPredicted RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 CCDC129Q6ZRS4 1044 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 OSBP2Q969R2 916 aa4.91□□□□□ -1.62
LIG4-201ENST00000356922 PRMT6Q96LA8 375 aaPredicted RBP4.91□□□□□ -1.62
LIG4-201ENST00000356922 HTTP42858 3142 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms