RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 JAG2Q9Y219 1238 aa25.24■■□□□ 1.63
SYNE2-201ENST00000341472 IPO8O15397 1037 aaKnown RBP25.23■■□□□ 1.63
SYNE2-201ENST00000341472 PDE8BO95263 885 aa25.23■■□□□ 1.63
SYNE2-201ENST00000341472 LBX1P52954 281 aa25.23■■□□□ 1.63
SYNE2-201ENST00000341472 HNRNPUQ00839 825 aaKnown RBP eCLIP25.23■■□□□ 1.63
SYNE2-201ENST00000341472 CCDC102AQ96A19 550 aa25.23■■□□□ 1.63
SYNE2-201ENST00000341472 FAM205AQ6ZU69 1335 aa25.22■■□□□ 1.63
SYNE2-201ENST00000341472 F8W031 263 aaPredicted RBP25.22■■□□□ 1.63
SYNE2-201ENST00000341472 NOGQ13253 232 aa25.22■■□□□ 1.63
SYNE2-201ENST00000341472 FBXO33Q7Z6M2 555 aa25.22■■□□□ 1.63
SYNE2-201ENST00000341472 VPS37DQ86XT2 251 aa25.22■■□□□ 1.63
SYNE2-201ENST00000341472 ZBED3Q96IU2 234 aaPredicted RBP25.22■■□□□ 1.63
SYNE2-201ENST00000341472 KIF16BQ96L93 1317 aa25.21■■□□□ 1.63
SYNE2-201ENST00000341472 EYA2O00167 538 aa25.21■■□□□ 1.63
SYNE2-201ENST00000341472 RFX5P48382 616 aaPredicted RBP25.21■■□□□ 1.63
SYNE2-201ENST00000341472 ZNF157P51786 506 aaPredicted RBP25.21■■□□□ 1.63
SYNE2-201ENST00000341472 FKBP1BP68106 108 aa25.21■■□□□ 1.63
SYNE2-201ENST00000341472 CAVIN4Q5BKX8 364 aa25.21■■□□□ 1.63
SYNE2-201ENST00000341472 PRAMEF18Q5VWM3 479 aa25.21■■□□□ 1.63
SYNE2-201ENST00000341472 MTMR14Q8NCE2 650 aa25.21■■□□□ 1.63
SYNE2-201ENST00000341472 HSPA8P11142 646 aaKnown RBP25.2■■□□□ 1.62
SYNE2-201ENST00000341472 SPEF2Q9C093 1822 aa25.2■■□□□ 1.62
SYNE2-201ENST00000341472 PTPN12Q05209 780 aaKnown RBP25.19■■□□□ 1.62
SYNE2-201ENST00000341472 CFAP100Q494V2 611 aa25.19■■□□□ 1.62
SYNE2-201ENST00000341472 INTS3Q68E01 1043 aaKnown RBP25.19■■□□□ 1.62
SYNE2-201ENST00000341472 APOBEC3FQ8IUX4 373 aaKnown RBP25.19■■□□□ 1.62
SYNE2-201ENST00000341472 VGLL2Q8N8G2 317 aa25.19■■□□□ 1.62
SYNE2-201ENST00000341472 TRPM7Q96QT4 1865 aa25.18■■□□□ 1.62
SYNE2-201ENST00000341472 FRAT2O75474 233 aaPredicted RBP25.18■■□□□ 1.62
SYNE2-201ENST00000341472 MFSD14BQ5SR56 506 aa25.18■■□□□ 1.62
SYNE2-201ENST00000341472 LRRFIP2Q9Y608 721 aaKnown RBP25.18■■□□□ 1.62
SYNE2-201ENST00000341472 BCAR3O75815 825 aa25.17■■□□□ 1.62
SYNE2-201ENST00000341472 IFIT1P09914 478 aaKnown RBP25.17■■□□□ 1.62
SYNE2-201ENST00000341472 NF2P35240 595 aa25.17■■□□□ 1.62
SYNE2-201ENST00000341472 PUM3Q15397 648 aaKnown RBP25.17■■□□□ 1.62
SYNE2-201ENST00000341472 FRAT1Q92837 279 aaPredicted RBP25.17■■□□□ 1.62
SYNE2-201ENST00000341472 ZIC5Q96T25 663 aa25.17■■□□□ 1.62
SYNE2-201ENST00000341472 FAM155AB1AL88 458 aaPredicted RBP25.16■■□□□ 1.62
SYNE2-201ENST00000341472 UBE2Q2LH0YL09 131 aa25.16■■□□□ 1.62
SYNE2-201ENST00000341472 CA12O43570 354 aa25.16■■□□□ 1.62
SYNE2-201ENST00000341472 MYO1BO43795 1136 aa25.16■■□□□ 1.62
SYNE2-201ENST00000341472 BCAMP50895 628 aa25.16■■□□□ 1.62
SYNE2-201ENST00000341472 RBM5P52756 815 aaKnown RBP eCLIP25.16■■□□□ 1.62
SYNE2-201ENST00000341472 TTLL12Q14166 644 aaPredicted RBP25.16■■□□□ 1.62
SYNE2-201ENST00000341472 PRMT6Q96LA8 375 aaPredicted RBP25.16■■□□□ 1.62
SYNE2-201ENST00000341472 MEIS3Q99687 375 aa25.16■■□□□ 1.62
SYNE2-201ENST00000341472 FBXO3Q9UK99 471 aa25.16■■□□□ 1.62
SYNE2-201ENST00000341472 SPDYE2BA6NHP3 402 aa25.15■■□□□ 1.62
SYNE2-201ENST00000341472 GNAI3P08754 354 aa25.15■■□□□ 1.62
SYNE2-201ENST00000341472 SPDYE6P0CI01 402 aa25.15■■□□□ 1.62
SYNE2-201ENST00000341472 FGFR2P21802 821 aa25.15■■□□□ 1.62
SYNE2-201ENST00000341472 KIF23Q02241 960 aaPredicted RBP25.15■■□□□ 1.62
SYNE2-201ENST00000341472 TTF2Q9UNY4 1162 aaKnown RBP25.15■■□□□ 1.62
SYNE2-201ENST00000341472 IQSEC3Q9UPP2 1182 aaPredicted RBP25.15■■□□□ 1.62
SYNE2-201ENST00000341472 PCDHAC2Q9Y5I4 1007 aa25.15■■□□□ 1.62
SYNE2-201ENST00000341472 CHAF1AQ13111 956 aaPredicted RBP25.14■■□□□ 1.62
SYNE2-201ENST00000341472 ATF7IPQ6VMQ6 1270 aa25.14■■□□□ 1.62
SYNE2-201ENST00000341472 MOB2Q70IA6 237 aa25.14■■□□□ 1.62
SYNE2-201ENST00000341472 ATG9AQ7Z3C6 839 aa25.14■■□□□ 1.62
SYNE2-201ENST00000341472 SIL1Q9H173 461 aa25.14■■□□□ 1.62
SYNE2-201ENST00000341472 DEFB129Q9H1M3 183 aa25.14■■□□□ 1.62
SYNE2-201ENST00000341472 CEP126Q9P2H0 1117 aa25.14■■□□□ 1.62
SYNE2-201ENST00000341472 CIAO1O76071 339 aa25.13■■□□□ 1.61
SYNE2-201ENST00000341472 SLC5A1P13866 664 aa25.13■■□□□ 1.61
SYNE2-201ENST00000341472 TBC1D22AQ8WUA7 517 aa25.13■■□□□ 1.61
SYNE2-201ENST00000341472 LPIN2Q92539 896 aa25.13■■□□□ 1.61
SYNE2-201ENST00000341472 CLRN2A0PK11 232 aa25.12■■□□□ 1.61
SYNE2-201ENST00000341472 SLC10A3P09131 477 aa25.12■■□□□ 1.61
SYNE2-201ENST00000341472 TRIM27P14373 513 aa25.12■■□□□ 1.61
SYNE2-201ENST00000341472 SERPINA10Q9UK55 444 aa25.12■■□□□ 1.61
SYNE2-201ENST00000341472 POLR2AP24928 1970 aaKnown RBP25.12■■□□□ 1.61
SYNE2-201ENST00000341472 PSME4Q14997 1843 aa25.12■■□□□ 1.61
SYNE2-201ENST00000341472 ARMC9Q7Z3E5 817 aa25.11■■□□□ 1.61
SYNE2-201ENST00000341472 TSKSQ9UJT2 592 aa25.11■■□□□ 1.61
SYNE2-201ENST00000341472 IL15P40933 162 aaPredicted RBP25.1■■□□□ 1.61
SYNE2-201ENST00000341472 CLUAP1Q96AJ1 413 aa25.1■■□□□ 1.61
SYNE2-201ENST00000341472 VEZTQ9HBM0 779 aa25.1■■□□□ 1.61
SYNE2-201ENST00000341472 COPRSQ9NQ92 184 aa25.1■■□□□ 1.61
SYNE2-201ENST00000341472 PRKG1Q13976 671 aa25.09■■□□□ 1.61
SYNE2-201ENST00000341472 ZKSCAN2Q63HK3 967 aa25.09■■□□□ 1.61
SYNE2-201ENST00000341472 RASAL3Q86YV0 1011 aa25.09■■□□□ 1.61
SYNE2-201ENST00000341472 PA2G4Q9UQ80 394 aaKnown RBP25.09■■□□□ 1.61
SYNE2-201ENST00000341472 TNNQ9UQP3 1299 aa25.09■■□□□ 1.61
SYNE2-201ENST00000341472 PPP2R3BQ9Y5P8 575 aa25.09■■□□□ 1.61
SYNE2-201ENST00000341472 CRKP46108 304 aa25.08■■□□□ 1.61
SYNE2-201ENST00000341472 SUPT20HL1Q3ZLR7 823 aa25.08■■□□□ 1.61
SYNE2-201ENST00000341472 REM2Q8IYK8 340 aaPredicted RBP25.08■■□□□ 1.61
SYNE2-201ENST00000341472 DZIP1LQ8IYY4 767 aaKnown RBP25.08■■□□□ 1.61
SYNE2-201ENST00000341472 CSRNP1Q96S65 589 aa25.08■■□□□ 1.61
SYNE2-201ENST00000341472 SRGAP3O43295 1099 aa25.07■■□□□ 1.6
SYNE2-201ENST00000341472 CAPN15O75808 1086 aa25.07■■□□□ 1.6
SYNE2-201ENST00000341472 GNAI2P04899 355 aa25.07■■□□□ 1.6
SYNE2-201ENST00000341472 HDLBPQ00341 1268 aaKnown RBP25.07■■□□□ 1.6
SYNE2-201ENST00000341472 GRIK5Q16478 980 aa25.07■■□□□ 1.6
SYNE2-201ENST00000341472 ATP2B3Q16720 1220 aa25.07■■□□□ 1.6
SYNE2-201ENST00000341472 ZNF70Q9UC06 446 aaPredicted RBP25.07■■□□□ 1.6
SYNE2-201ENST00000341472 AOX1Q06278 1338 aa25.07■■□□□ 1.6
SYNE2-201ENST00000341472 RASA3Q14644 834 aa25.06■■□□□ 1.6
SYNE2-201ENST00000341472 MRIQ9BWK5 157 aa25.06■■□□□ 1.6
SYNE2-201ENST00000341472 TDRD3Q9H7E2 651 aaKnown RBP25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms