RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 USP50Q70EL3 339 aaPredicted RBP20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 SSH3Q8TE77 659 aa20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 FBXW7Q969H0 707 aa20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 COPRSQ9NQ92 184 aa20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 ASTN2O75129 1339 aaPredicted RBP20.19■□□□□ 0.82
PDLIM1-201ENST00000329399 EIF5BO60841 1220 aaKnown RBP20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 IL1R1P14778 569 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 CNTROBQ8N137 903 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 CERS5Q8N5B7 392 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 ZNF646O15015 1829 aaPredicted RBP20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 H7C1D1 291 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 RAB11FIP3O75154 756 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 RPS12P25398 132 aaKnown RBP20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 BCAMP50895 628 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 STRIP1Q5VSL9 837 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 FBXO33Q7Z6M2 555 aa20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 IQSEC3Q9UPP2 1182 aaPredicted RBP20.18■□□□□ 0.82
PDLIM1-201ENST00000329399 CIAO1O76071 339 aa20.17■□□□□ 0.82
PDLIM1-201ENST00000329399 AGBL3Q8NEM8 1001 aa20.17■□□□□ 0.82
PDLIM1-201ENST00000329399 TDRD7Q8NHU6 1098 aaKnown RBP20.17■□□□□ 0.82
PDLIM1-201ENST00000329399 PASKQ96RG2 1323 aa20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 PSME4Q14997 1843 aa20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 TRAF5O00463 557 aa20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 HIBADHP31937 336 aaKnown RBP20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 ZNF280AP59817 542 aaPredicted RBP20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 POLA2Q14181 598 aa20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 ZNF804AQ7Z570 1209 aa20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 PGAP2Q9UHJ9 254 aa20.16■□□□□ 0.82
PDLIM1-201ENST00000329399 USP17L8P0C7I0 530 aa20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 APLP1P51693 650 aa20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 TFCP2Q12800 502 aa20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 PUM3Q15397 648 aaKnown RBP20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 DNAJC5GQ8N7S2 189 aa20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 GLIS2Q9BZE0 524 aaPredicted RBP20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 PCDHAC2Q9Y5I4 1007 aa20.14■□□□□ 0.81
PDLIM1-201ENST00000329399 SASH1O94885 1247 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 IL15P40933 162 aaPredicted RBP20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 TIMM10P62072 90 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 GRIK5Q16478 980 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 KIAA0825Q8IV33 1275 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 LNPKQ9C0E8 428 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 CEP126Q9P2H0 1117 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 FBXO3Q9UK99 471 aa20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 SCAF8Q9UPN6 1271 aaKnown RBP20.13■□□□□ 0.81
PDLIM1-201ENST00000329399 ZNF609O15014 1411 aa20.12■□□□□ 0.81
PDLIM1-201ENST00000329399 ADORA1P30542 326 aa20.12■□□□□ 0.81
PDLIM1-201ENST00000329399 POLR2AP24928 1970 aaKnown RBP20.12■□□□□ 0.81
PDLIM1-201ENST00000329399 KIF4BQ2VIQ3 1234 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 LPIN2Q92539 896 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 LRRCC1Q9C099 1032 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 MYOZ2Q9NPC6 264 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 NOP58Q9Y2X3 529 aaKnown RBP20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 SCARF1Q14162 830 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 ATP2B3Q16720 1220 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 NBPF9Q3BBW0 867 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 C8orf34Q49A92 452 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 BMP2KLQ5H9B9 411 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 ERC1Q8IUD2 1116 aa20.11■□□□□ 0.81
PDLIM1-201ENST00000329399 FAM205AQ6ZU69 1335 aa20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 F8W031 263 aaPredicted RBP20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 IFIT1P09914 478 aaKnown RBP20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 CST9Q5W186 159 aa20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 USP48Q86UV5 1035 aa20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 SKAP1Q86WV1 359 aa20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 ZC3H15Q8WU90 426 aaKnown RBP20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 AOX1Q06278 1338 aa20.1■□□□□ 0.81
PDLIM1-201ENST00000329399 SLC5A1P13866 664 aa20.08■□□□□ 0.81
PDLIM1-201ENST00000329399 PHKA1P46020 1223 aa20.08■□□□□ 0.81
PDLIM1-201ENST00000329399 CHAF1AQ13111 956 aaPredicted RBP20.08■□□□□ 0.81
PDLIM1-201ENST00000329399 CAVIN4Q5BKX8 364 aa20.08■□□□□ 0.81
PDLIM1-201ENST00000329399 VPS37DQ86XT2 251 aa20.08■□□□□ 0.81
PDLIM1-201ENST00000329399 OSBPL3Q9H4L5 887 aa20.08■□□□□ 0.81
PDLIM1-201ENST00000329399 ADM5C9JUS6 153 aa20.07■□□□□ 0.8
PDLIM1-201ENST00000329399 WNT10BO00744 389 aa20.07■□□□□ 0.8
PDLIM1-201ENST00000329399 KIF1BPQ96EK5 621 aa20.07■□□□□ 0.8
PDLIM1-201ENST00000329399 ZBED3Q96IU2 234 aaPredicted RBP20.07■□□□□ 0.8
PDLIM1-201ENST00000329399 GGA3Q9NZ52 723 aa20.07■□□□□ 0.8
PDLIM1-201ENST00000329399 SURF6O75683 361 aaKnown RBP20.06■□□□□ 0.8
PDLIM1-201ENST00000329399 G3BP1Q13283 466 aaKnown RBP eCLIP20.06■□□□□ 0.82e-6■■■□□ 18.9
PDLIM1-201ENST00000329399 MFSD14BQ5SR56 506 aa20.06■□□□□ 0.8
PDLIM1-201ENST00000329399 ANGEL2Q5VTE6 544 aaKnown RBP20.06■□□□□ 0.8
PDLIM1-201ENST00000329399 MYO3BQ8WXR4 1341 aa20.06■□□□□ 0.8
PDLIM1-201ENST00000329399 COL1A1P02452 1464 aaPredicted RBP20.06■□□□□ 0.8
PDLIM1-201ENST00000329399 A0A1B0GUL7 405 aa20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 PLEKHM2Q8IWE5 1019 aa20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 OGFOD1Q8N543 542 aa20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 FKBP1AP62942 108 aaKnown RBP20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 CDC37L1Q7L3B6 337 aa20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 KRT26Q7Z3Y9 468 aa20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 XAGE2Q96GT9 111 aa20.05■□□□□ 0.8
PDLIM1-201ENST00000329399 TMEM88BA6NKF7 163 aa20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 FRAT2O75474 233 aaPredicted RBP20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 PRAMEF18Q5VWM3 479 aa20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 CCDC102BQ68D86 513 aa20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 UPF2Q9HAU5 1272 aaKnown RBP20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 CREBZFQ9NS37 354 aa20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 EXOC6BQ9Y2D4 811 aa20.04■□□□□ 0.8
PDLIM1-201ENST00000329399 ANP32AP39687 249 aaKnown RBP20.03■□□□□ 0.8
PDLIM1-201ENST00000329399 PRMT6Q96LA8 375 aaPredicted RBP20.03■□□□□ 0.8
PDLIM1-201ENST00000329399 NEUROD6Q96NK8 337 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms