RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 WDR33Q9C0J8 1336 aaKnown RBP20.39■□□□□ 0.85
LSM1-201ENST00000311351 EYA2O00167 538 aa20.39■□□□□ 0.85
LSM1-201ENST00000311351 WNT10BO00744 389 aa20.39■□□□□ 0.85
LSM1-201ENST00000311351 CDCA5Q96FF9 252 aa20.39■□□□□ 0.85
LSM1-201ENST00000311351 CAPNS2Q96L46 248 aa20.39■□□□□ 0.85
LSM1-201ENST00000311351 SIL1Q9H173 461 aa20.39■□□□□ 0.85
LSM1-201ENST00000311351 PITPNM2Q9BZ72 1349 aa20.38■□□□□ 0.85
LSM1-201ENST00000311351 F8W031 263 aaPredicted RBP20.38■□□□□ 0.85
LSM1-201ENST00000311351 PDE8BO95263 885 aa20.38■□□□□ 0.85
LSM1-201ENST00000311351 HIBADHP31937 336 aaKnown RBP20.38■□□□□ 0.85
LSM1-201ENST00000311351 TDRD7Q8NHU6 1098 aaKnown RBP20.38■□□□□ 0.85
LSM1-201ENST00000311351 HDAC9Q9UKV0 1011 aa20.38■□□□□ 0.85
LSM1-201ENST00000311351 IQSEC3Q9UPP2 1182 aaPredicted RBP20.38■□□□□ 0.85
LSM1-201ENST00000311351 ATG9AQ7Z3C6 839 aa20.37■□□□□ 0.85
LSM1-201ENST00000311351 PA2G4Q9UQ80 394 aaKnown RBP20.37■□□□□ 0.85
LSM1-201ENST00000311351 FAM205AQ6ZU69 1335 aa20.36■□□□□ 0.85
LSM1-201ENST00000311351 ZKSCAN2Q63HK3 967 aa20.36■□□□□ 0.85
LSM1-201ENST00000311351 GBA2Q9HCG7 927 aaPredicted RBP20.36■□□□□ 0.85
LSM1-201ENST00000311351 PCDHAC2Q9Y5I4 1007 aa20.36■□□□□ 0.85
LSM1-201ENST00000311351 GNAI3P08754 354 aa20.35■□□□□ 0.85
LSM1-201ENST00000311351 FGFR2P21802 821 aa20.35■□□□□ 0.85
LSM1-201ENST00000311351 HUNKP57058 714 aa20.35■□□□□ 0.85
LSM1-201ENST00000311351 FKBP1AP62942 108 aaKnown RBP20.35■□□□□ 0.85
LSM1-201ENST00000311351 PUM3Q15397 648 aaKnown RBP20.35■□□□□ 0.85
LSM1-201ENST00000311351 TMEM57Q8N5G2 664 aa20.35■□□□□ 0.85
LSM1-201ENST00000311351 ZBED3Q96IU2 234 aaPredicted RBP20.35■□□□□ 0.85
LSM1-201ENST00000311351 PAPPA2Q9BXP8 1791 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 AOC2O75106 756 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 ECE1P42892 770 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 MFSD14BQ5SR56 506 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 PRAMEF18Q5VWM3 479 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 FBXO33Q7Z6M2 555 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 VPS37DQ86XT2 251 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 HDAC5Q9UQL6 1122 aa20.34■□□□□ 0.85
LSM1-201ENST00000311351 FOXN1O15353 648 aa20.33■□□□□ 0.85
LSM1-201ENST00000311351 CIAO1O76071 339 aa20.33■□□□□ 0.85
LSM1-201ENST00000311351 MMP14P50281 582 aa20.33■□□□□ 0.85
LSM1-201ENST00000311351 BCAMP50895 628 aa20.33■□□□□ 0.85
LSM1-201ENST00000311351 CHAF1AQ13111 956 aaPredicted RBP20.33■□□□□ 0.85
LSM1-201ENST00000311351 CAVIN4Q5BKX8 364 aa20.33■□□□□ 0.85
LSM1-201ENST00000311351 C2orf69Q8N8R5 385 aa20.33■□□□□ 0.85
LSM1-201ENST00000311351 AOX1Q06278 1338 aa20.32■□□□□ 0.84
LSM1-201ENST00000311351 COL1A1P02452 1464 aaPredicted RBP20.32■□□□□ 0.84
LSM1-201ENST00000311351 IFIT1P09914 478 aaKnown RBP20.32■□□□□ 0.84
LSM1-201ENST00000311351 DLGAP5Q15398 846 aa20.32■□□□□ 0.84
LSM1-201ENST00000311351 CFAP100Q494V2 611 aa20.32■□□□□ 0.84
LSM1-201ENST00000311351 HHIPL1Q96JK4 782 aa20.32■□□□□ 0.84
LSM1-201ENST00000311351 WBP1LQ9NX94 342 aa20.32■□□□□ 0.84
LSM1-201ENST00000311351 SRGAP3O43295 1099 aa20.31■□□□□ 0.84
LSM1-201ENST00000311351 SLC5A1P13866 664 aa20.31■□□□□ 0.84
LSM1-201ENST00000311351 GRIK5Q16478 980 aa20.31■□□□□ 0.84
LSM1-201ENST00000311351 COL13A1Q5TAT6 717 aaPredicted RBP20.31■□□□□ 0.84
LSM1-201ENST00000311351 COPRSQ9NQ92 184 aa20.31■□□□□ 0.84
LSM1-201ENST00000311351 FBXO3Q9UK99 471 aa20.31■□□□□ 0.84
LSM1-201ENST00000311351 SPDYE2BA6NHP3 402 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 FRAT2O75474 233 aaPredicted RBP20.3■□□□□ 0.84
LSM1-201ENST00000311351 SPDYE6P0CI01 402 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 RLBP1P12271 317 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 MTX1Q13505 466 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 ATP2B3Q16720 1220 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 APOBEC3FQ8IUX4 373 aaKnown RBP20.3■□□□□ 0.84
LSM1-201ENST00000311351 FTSJ3Q8IY81 847 aaKnown RBP20.3■□□□□ 0.84
LSM1-201ENST00000311351 MTMR14Q8NCE2 650 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 LPIN2Q92539 896 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 AIDAQ96BJ3 306 aa20.3■□□□□ 0.84
LSM1-201ENST00000311351 TTF2Q9UNY4 1162 aaKnown RBP20.3■□□□□ 0.84
LSM1-201ENST00000311351 CLRN2A0PK11 232 aa20.29■□□□□ 0.84
LSM1-201ENST00000311351 GNAI2P04899 355 aa20.29■□□□□ 0.84
LSM1-201ENST00000311351 IL15P40933 162 aaPredicted RBP20.29■□□□□ 0.84
LSM1-201ENST00000311351 MOB2Q70IA6 237 aa20.29■□□□□ 0.84
LSM1-201ENST00000311351 DZIP1LQ8IYY4 767 aaKnown RBP20.29■□□□□ 0.84
LSM1-201ENST00000311351 CEP126Q9P2H0 1117 aa20.29■□□□□ 0.84
LSM1-201ENST00000311351 RBM5P52756 815 aaKnown RBP eCLIP20.28■□□□□ 0.84
LSM1-201ENST00000311351 RGMBQ6NW40 437 aa20.28■□□□□ 0.84
LSM1-201ENST00000311351 PRMT6Q96LA8 375 aaPredicted RBP20.28■□□□□ 0.84
LSM1-201ENST00000311351 ZIC5Q96T25 663 aa20.28■□□□□ 0.84
LSM1-201ENST00000311351 PNMA6EA0A0J9YXQ4 647 aa20.27■□□□□ 0.84
LSM1-201ENST00000311351 MAP2K1Q02750 393 aaPredicted RBP20.27■□□□□ 0.84
LSM1-201ENST00000311351 ITPRIPQ8IWB1 547 aa20.27■□□□□ 0.84
LSM1-201ENST00000311351 C1orf115Q9H7X2 142 aa20.27■□□□□ 0.84
LSM1-201ENST00000311351 SSC5DA1L4H1 1573 aa20.26■□□□□ 0.83
LSM1-201ENST00000311351 FAM155AB1AL88 458 aaPredicted RBP20.26■□□□□ 0.83
LSM1-201ENST00000311351 ADORA1P30542 326 aa20.26■□□□□ 0.83
LSM1-201ENST00000311351 MAP2K2P36507 400 aa20.26■□□□□ 0.83
LSM1-201ENST00000311351 VEZTQ9HBM0 779 aa20.26■□□□□ 0.83
LSM1-201ENST00000311351 CRKP46108 304 aa20.25■□□□□ 0.83
LSM1-201ENST00000311351 ZNF157P51786 506 aaPredicted RBP20.25■□□□□ 0.83
LSM1-201ENST00000311351 TBC1D22AQ8WUA7 517 aa20.25■□□□□ 0.83
LSM1-201ENST00000311351 SERPINA10Q9UK55 444 aa20.25■□□□□ 0.83
LSM1-201ENST00000311351 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.25■□□□□ 0.83
LSM1-201ENST00000311351 UBE2Q2LH0YL09 131 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 MYO1BO43795 1136 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 HSPA8P11142 646 aaKnown RBP20.24■□□□□ 0.83
LSM1-201ENST00000311351 PHKA1P46020 1223 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 CTCFP49711 727 aaPredicted RBP20.24■□□□□ 0.83
LSM1-201ENST00000311351 FKBP1BP68106 108 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 CACNB1Q02641 598 aaPredicted RBP20.24■□□□□ 0.83
LSM1-201ENST00000311351 TFCP2Q12800 502 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 NOGQ13253 232 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 PRKG1Q13976 671 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms