RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DHX32Q7L7V1 743 aaKnown RBP19.62■□□□□ 0.73
SYNPO-201ENST00000307662 KRT28Q7Z3Y7 464 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 POTEDQ86YR6 584 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 NAPGQ99747 312 aaPredicted RBP19.62■□□□□ 0.73
SYNPO-201ENST00000307662 UNC13AQ9UPW8 1703 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 ERMNQ8TAM6 284 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 CEP83Q9Y592 693 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 A0A1B0GUA9 196 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 ANKRD13DQ6ZTN6 518 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 CARD6Q9BX69 1037 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 ARHGEF12Q9NZN5 1544 aa19.62■□□□□ 0.73
SYNPO-201ENST00000307662 FERP16591 822 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 NAA25Q14CX7 972 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 NEK11Q8NG66 645 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 TSNARE1Q96NA8 513 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 SMC6Q96SB8 1091 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 CFAP43Q8NDM7 1665 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 A0A1B0GVL5 298 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 GRM8O00222 908 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 CBX8Q9HC52 389 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 SERPINA10Q9UK55 444 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 TNRQ92752 1358 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 GPTP24298 496 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 ZBTB16Q05516 673 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 GRIPAP1Q4V328 841 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 JARID2Q92833 1246 aaPredicted RBP19.61■□□□□ 0.73
SYNPO-201ENST00000307662 LMBRD1Q9NUN5 540 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 IMPACTQ9P2X3 320 aa19.61■□□□□ 0.73
SYNPO-201ENST00000307662 CCDC160A6NGH7 325 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 CCDC174Q6PII3 467 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 PAG1Q9NWQ8 432 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 TTF2Q9UNY4 1162 aaKnown RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 A6NNZ2 444 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 LACTBP83111 547 aaPredicted RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 TUBB8Q3ZCM7 444 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 DAAM2Q86T65 1068 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 PLCD3Q8N3E9 789 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 TEX13AQ9BXU3 409 aaPredicted RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 LDHCP07864 332 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 ARID5AQ03989 594 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 SREK1Q8WXA9 508 aaKnown RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 WDHD1O75717 1129 aaPredicted RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 INPP5BP32019 993 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 SETDB1Q15047 1291 aa19.6■□□□□ 0.73
SYNPO-201ENST00000307662 CRNKL1Q9BZJ0 848 aaKnown RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 MTRF1LQ9UGC7 380 aaKnown RBP19.6■□□□□ 0.73
SYNPO-201ENST00000307662 SHANK2Q9UPX8 1470 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 PPIP5K1Q6PFW1 1433 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 NDUFAB1O14561 156 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 ATP2A1O14983 1001 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 BAG3O95817 575 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 POLKQ9UBT6 870 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 TLDC2A0PJX2 215 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 SNRPA1P09661 255 aaKnown RBP19.59■□□□□ 0.73
SYNPO-201ENST00000307662 PPP1R9BQ96SB3 815 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 SLC4A4Q9Y6R1 1079 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 SMIM23A6NLE4 172 aa19.59■□□□□ 0.73
SYNPO-201ENST00000307662 KRT2P35908 639 aa19.58■□□□□ 0.73
SYNPO-201ENST00000307662 FERMT1Q9BQL6 677 aa19.58■□□□□ 0.73
SYNPO-201ENST00000307662 SOS1Q07889 1333 aaPredicted RBP19.58■□□□□ 0.73
SYNPO-201ENST00000307662 GNAQP50148 359 aa19.58■□□□□ 0.73
SYNPO-201ENST00000307662 KSR2Q6VAB6 950 aa19.58■□□□□ 0.73
SYNPO-201ENST00000307662 BCL2L12Q9HB09 334 aa19.58■□□□□ 0.73
SYNPO-201ENST00000307662 WDR62O43379 1518 aa19.58■□□□□ 0.73
SYNPO-201ENST00000307662 IL15P40933 162 aaPredicted RBP19.58■□□□□ 0.72
SYNPO-201ENST00000307662 IGSF22Q8N9C0 903 aa19.58■□□□□ 0.72
SYNPO-201ENST00000307662 PA2G4Q9UQ80 394 aaKnown RBP19.58■□□□□ 0.72
SYNPO-201ENST00000307662 TRAPPC8Q9Y2L5 1435 aa19.58■□□□□ 0.72
SYNPO-201ENST00000307662 TRIM14Q14142 442 aa19.58■□□□□ 0.72
SYNPO-201ENST00000307662 TSPYL6Q8N831 410 aa19.58■□□□□ 0.72
SYNPO-201ENST00000307662 CDC5LQ99459 802 aaKnown RBP19.58■□□□□ 0.72
SYNPO-201ENST00000307662 GOLGA6CA6NDK9 693 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 ZBTB7BO15156 539 aaPredicted RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 GOLGA6DP0CG33 693 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 CHST3Q7LGC8 479 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 UBLCP1Q8WVY7 318 aaPredicted RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 GOLGA6AQ9NYA3 693 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 RNF113AO15541 343 aaKnown RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 ZNF500O60304 480 aaPredicted RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 ZNF518AQ6AHZ1 1483 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 FANCCQ00597 558 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 STIM2Q9P246 746 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 KIAA0556O60303 1618 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 PER1O15534 1290 aaPredicted RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 HMGB2P26583 209 aaKnown RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 OAS2P29728 719 aaKnown RBP19.57■□□□□ 0.72
SYNPO-201ENST00000307662 HEATR3Q7Z4Q2 680 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 IQUBQ8NA54 791 aa19.57■□□□□ 0.72
SYNPO-201ENST00000307662 ASXL2Q76L83 1435 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 ATP2B3Q16720 1220 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 RTL9Q8NET4 1388 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 EIF4A2Q14240 407 aaKnown RBP19.56■□□□□ 0.72
SYNPO-201ENST00000307662 ZPR1O75312 459 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 CPA1P15085 419 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 RPS6KB1P23443 525 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 CALML3P27482 149 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 CARD14Q9BXL6 1004 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 KCNK9Q9NPC2 374 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 STX8Q9UNK0 236 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 CALM1P0DP23 149 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms