RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RPS6KB1P23443 525 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 DNAI2Q9GZS0 605 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 BLMP54132 1417 aaPredicted RBP12.23□□□□□ -0.45
CD44-201ENST00000263398 SLC4A8Q2Y0W8 1093 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 HEATR3Q7Z4Q2 680 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 DHX37Q8IY37 1157 aaKnown RBP12.23□□□□□ -0.45
CD44-201ENST00000263398 TRPM2O94759 1503 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 NEBLO76041 1014 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 MYL5Q02045 173 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 KIF5AQ12840 1032 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 GIMAP7Q8NHV1 300 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 GOLGA1Q92805 767 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 FEZ1Q99689 392 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 SBNO2Q9Y2G9 1366 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 TTC37Q6PGP7 1564 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 SAMD9LQ8IVG5 1584 aa12.23□□□□□ -0.45
CD44-201ENST00000263398 HSF2BPO75031 334 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 TUBBP07437 444 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 SPATA31E1Q6ZUB1 1445 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 KRI1Q8N9T8 703 aaKnown RBP12.22□□□□□ -0.45
CD44-201ENST00000263398 LLPHQ9BRT6 129 aaKnown RBP12.22□□□□□ -0.45
CD44-201ENST00000263398 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.22□□□□□ -0.45
CD44-201ENST00000263398 SNX14Q9Y5W7 946 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 V9GYY5 206 aaPredicted RBP12.22□□□□□ -0.45
CD44-201ENST00000263398 MAGEB6P1A0A0J9YX57 407 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 IQUBQ8NA54 791 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 PLVAPQ9BX97 442 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 EDC4Q6P2E9 1401 aaKnown RBP12.22□□□□□ -0.45
CD44-201ENST00000263398 RFC4P35249 363 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 NAPAP54920 295 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 KIAA0753Q2KHM9 967 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.22□□□□□ -0.45
CD44-201ENST00000263398 TIGD1Q96MW7 591 aa12.22□□□□□ -0.45
CD44-201ENST00000263398 NIP7Q9Y221 180 aaKnown RBP eCLIP12.22□□□□□ -0.45
CD44-201ENST00000263398 IRS4O14654 1257 aaPredicted RBP12.21□□□□□ -0.45
CD44-201ENST00000263398 CTNNA2P26232 953 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 CCDC42Q96M95 316 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 UTP14AQ9BVJ6 771 aaKnown RBP12.21□□□□□ -0.45
CD44-201ENST00000263398 ELP1O95163 1332 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 GOLGA6L10A0A0M3HER8 536 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 A0A1B0GVL5 298 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 SLC27A2O14975 620 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 IL2RBP14784 551 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 C6orf50Q9HD87 102 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 EYA2O00167 538 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 KRT2P35908 639 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 SETDB2Q96T68 719 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 MMRN2Q9H8L6 949 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 TBX22Q9Y458 520 aa12.21□□□□□ -0.45
CD44-201ENST00000263398 STX17P56962 302 aa12.21□□□□□ -0.46
CD44-201ENST00000263398 SPECC1LQ69YQ0 1117 aa12.21□□□□□ -0.46
CD44-201ENST00000263398 SYT10Q6XYQ8 523 aa12.21□□□□□ -0.46
CD44-201ENST00000263398 DZIP3Q86Y13 1208 aaKnown RBP12.21□□□□□ -0.46
CD44-201ENST00000263398 BBXQ8WY36 941 aaPredicted RBP12.2□□□□□ -0.46
CD44-201ENST00000263398 MAST1Q9Y2H9 1570 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 SBNO1A3KN83 1393 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 KAT6BQ8WYB5 2073 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 BICDL2A1A5D9 508 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 ATP6V1AP38606 617 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 TIMM10P62072 90 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 RILPL1Q5EBL4 403 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 CCDC174Q6PII3 467 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 MAGEB6Q8N7X4 407 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 HELBQ8NG08 1087 aaPredicted RBP12.2□□□□□ -0.46
CD44-201ENST00000263398 SELENOOQ9BVL4 669 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 ZMYND15Q9H091 742 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 SAMM50Q9Y512 469 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 PTPRTO14522 1441 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 IVLP07476 585 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 TNNI3KQ59H18 835 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 KRT79Q5XKE5 535 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 DRC1Q96MC2 740 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 SCLT1Q96NL6 688 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 LUC7L2Q9Y383 392 aaKnown RBP12.2□□□□□ -0.46
CD44-201ENST00000263398 FPGT-TNNI3KV9GXZ4 949 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 CHD1O14646 1710 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 FSD2A1L4K1 749 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 MAPK8IP2Q13387 824 aaPredicted RBP12.2□□□□□ -0.46
CD44-201ENST00000263398 CNGA4Q8IV77 575 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 TBC1D5Q92609 795 aa12.2□□□□□ -0.46
CD44-201ENST00000263398 METTL22Q9BUU2 404 aaPredicted RBP12.2□□□□□ -0.46
CD44-201ENST00000263398 CCDC94Q9BW85 323 aaPredicted RBP12.2□□□□□ -0.46
CD44-201ENST00000263398 PNMA6EA0A0J9YXQ4 647 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 A0A1B0GUL7 405 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 ZNF790Q6PG37 636 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 TRMT1LQ7Z2T5 733 aaKnown RBP12.19□□□□□ -0.46
CD44-201ENST00000263398 TMEM87BQ96K49 555 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 DBNDD2Q9BQY9 259 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 C19orf44Q9H6X5 657 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 UGGT1Q9NYU2 1555 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 SIRT1Q96EB6 747 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 OPA1O60313 960 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 GNA11P29992 359 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 DTHD1Q6ZMT9 781 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 USP37Q86T82 979 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 MIGA1Q8NAN2 632 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 PLBD2Q8NHP8 589 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 CLSTN2Q9H4D0 955 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 LZTFL1Q9NQ48 299 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 RRAGDQ9NQL2 400 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms